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The map label for this gene is psd [H]

Identifier: 21243455

GI number: 21243455

Start: 3189275

End: 3190117

Strand: Direct

Name: psd [H]

Synonym: XAC2728

Alternate gene names: 21243455

Gene position: 3189275-3190117 (Clockwise)

Preceding gene: 21243454

Following gene: 21243457

Centisome position: 61.62

GC content: 65.48

Gene sequence:

>843_bases
GTGAGTCTTGTCACTTCCCTGACCTACGTGCTGCCGCACCGGCTGCTGTCGTCGCTGGCACGCGCGCTGGCCTATTCGCA
GACACCGTCCACCAAGCAGTGGTTGATCGACACGGTGACGCGTAAGTTCGGTGTGGATCTGAGTGAAGCGCAGGAGCCGG
ATCCGCACGCCTACCCCACCTTCAACGCGTTTTTTACCCGCGCCTTGAAGCCCGGCGCGCGCGTGCCGGATGCCGACCCT
TCGGCAGTGCTGATGCCGGCCGACGGCCGCATCAGCCAGCTCGGCCCGGTCGAGAACGGCCGCATTTTCCAGGCCAAGGG
GCAGTCGTTCACTGCTGCAGAATTGCTCGGCGACGAAGCCGCGGCAGCGCCATTCAACGACGGCGTGTTCGCCACCGTGT
ATCTGTCGCCCAAGGACTACCACCGCGTGCATATGCCGTGGACCGGCACCCTGCGCGAAACCGTGCATGTGCCCGGCCGG
CTGTTCAGTGTGGGCCCGGATGCAGTGCGCAAGGTGCCGCGCCTGTTCGCGCGCAACGAGCGGCTGGTGTGTCACTTCGA
CACCGAGTTCGGCCCGATGGCTTCGGTGATGGTTGGCGCGTTATTGGTCTCGGGCGTGGAGACGGTCTGGAGCGGCGTGG
AGATTCCGCGCTATGGCGACCGCATCACGCGCAAGGACTATCGCGGCAAGGGCGTCGTGCTGGAGAAGTTCGCGGAGATG
GCGCGCTTCAACTACGGCTCGACCGTGATCGTGTTGCTGCCGCCGGGTGTGGCCACGCTCGATGGCGGACTTGCGGCCGA
AACATCGGTTCGTCTTGGCCAGGCACTCGCCCGTCGTCAGTGA

Upstream 100 bases:

>100_bases
TGCTCGATCCGCAGGGCCGCCTGGCCGGCCTGATCCGCCCCCCGCTCGACCCGAAGGCGATTGCCGCCGACCTCCAACAG
CTGACCAAGGTAACCGCTCC

Downstream 100 bases:

>100_bases
ATTGCAACGACGCGTCGTAGGAGCGGACCTGGCGCGGCCAGGCATTCCCGACGATGCGCCGCCCTACGCGCACGCCATCT
TGCTCAGCTTCAGATAAAGA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSLVTSLTYVLPHRLLSSLARALAYSQTPSTKQWLIDTVTRKFGVDLSEAQEPDPHAYPTFNAFFTRALKPGARVPDADP
SAVLMPADGRISQLGPVENGRIFQAKGQSFTAAELLGDEAAAAPFNDGVFATVYLSPKDYHRVHMPWTGTLRETVHVPGR
LFSVGPDAVRKVPRLFARNERLVCHFDTEFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGVVLEKFAEM
ARFNYGSTVIVLLPPGVATLDGGLAAETSVRLGQALARRQ

Sequences:

>Translated_280_residues
MSLVTSLTYVLPHRLLSSLARALAYSQTPSTKQWLIDTVTRKFGVDLSEAQEPDPHAYPTFNAFFTRALKPGARVPDADP
SAVLMPADGRISQLGPVENGRIFQAKGQSFTAAELLGDEAAAAPFNDGVFATVYLSPKDYHRVHMPWTGTLRETVHVPGR
LFSVGPDAVRKVPRLFARNERLVCHFDTEFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGVVLEKFAEM
ARFNYGSTVIVLLPPGVATLDGGLAAETSVRLGQALARRQ
>Mature_279_residues
SLVTSLTYVLPHRLLSSLARALAYSQTPSTKQWLIDTVTRKFGVDLSEAQEPDPHAYPTFNAFFTRALKPGARVPDADPS
AVLMPADGRISQLGPVENGRIFQAKGQSFTAAELLGDEAAAAPFNDGVFATVYLSPKDYHRVHMPWTGTLRETVHVPGRL
FSVGPDAVRKVPRLFARNERLVCHFDTEFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGVVLEKFAEMA
RFNYGSTVIVLLPPGVATLDGGLAAETSVRLGQALARRQ

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=304, Percent_Identity=30.9210526315789, Blast_Score=114, Evalue=1e-25,
Organism=Escherichia coli, GI1790604, Length=281, Percent_Identity=46.2633451957295, Blast_Score=240, Evalue=6e-65,
Organism=Caenorhabditis elegans, GI71980843, Length=277, Percent_Identity=29.9638989169675, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71980840, Length=277, Percent_Identity=29.9638989169675, Blast_Score=104, Evalue=7e-23,
Organism=Saccharomyces cerevisiae, GI6321609, Length=263, Percent_Identity=29.6577946768061, Blast_Score=114, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24649526, Length=313, Percent_Identity=28.4345047923323, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24649528, Length=313, Percent_Identity=28.4345047923323, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24649524, Length=313, Percent_Identity=28.4345047923323, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30542; Mature: 30411

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVTSLTYVLPHRLLSSLARALAYSQTPSTKQWLIDTVTRKFGVDLSEAQEPDPHAYPT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
FNAFFTRALKPGARVPDADPSAVLMPADGRISQLGPVENGRIFQAKGQSFTAAELLGDEA
HHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCEEEEECCCCCHHHHHHCCCC
AAAPFNDGVFATVYLSPKDYHRVHMPWTGTLRETVHVPGRLFSVGPDAVRKVPRLFARNE
CCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC
RLVCHFDTEFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGVVLEKFAEM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
ARFNYGSTVIVLLPPGVATLDGGLAAETSVRLGQALARRQ
HHCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLVTSLTYVLPHRLLSSLARALAYSQTPSTKQWLIDTVTRKFGVDLSEAQEPDPHAYPT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
FNAFFTRALKPGARVPDADPSAVLMPADGRISQLGPVENGRIFQAKGQSFTAAELLGDEA
HHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCEEEEECCCCCHHHHHHCCCC
AAAPFNDGVFATVYLSPKDYHRVHMPWTGTLRETVHVPGRLFSVGPDAVRKVPRLFARNE
CCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC
RLVCHFDTEFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGVVLEKFAEM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
ARFNYGSTVIVLLPPGVATLDGGLAAETSVRLGQALARRQ
HHCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA