The gene/protein map for NC_003919 is currently unavailable.
Definition Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession NC_003919
Length 5,175,554

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The map label for this gene is yhxD [H]

Identifier: 21241932

GI number: 21241932

Start: 1341203

End: 1342105

Strand: Reverse

Name: yhxD [H]

Synonym: XAC1178

Alternate gene names: 21241932

Gene position: 1342105-1341203 (Counterclockwise)

Preceding gene: 21241933

Following gene: 21241931

Centisome position: 25.93

GC content: 61.57

Gene sequence:

>903_bases
ATGTCCAGCACCAAGAATCAGTATGAAATGCAGAACCCGTTGACCCAGTTTCCCCAGCCGCAATTTCCGGAACAAACCCA
GCAGGCGCCGGGGACCATCCATGCACTGCAGCCCAAGGCAGACCACGGCGAGCAGAGCTACAAGGGCTTTGGTCGTCTGC
AGGGCCGCAAGGCACTGGTCACCGGCGCAGACTCCGGCATCGGGCGCGCCACCGCCATTGCTTTCGCACGCGAAGGTGCC
GATATCGTGCTCAATTATCTGCCTGAAGAAGAACAGGACGCAGCCGAGGTGGTGCAACTGATCCAGGCAGAAGGGCGCAA
AGCCATCAGCGTTCCGGGCGACCTCAAGAACGAGGCGTTTTGCACCGAACTGGTGGACCGTGCAGTGAAGGAGCTTGGCG
GCCTGGACGTGCTGGTCAATATCGCAGGCAAACAGACCGCCGTGAAAGACATCGCAGACATCACGACCGAGCAGTTCGAC
GCTACCTACAAGACCAATGTCTATGCGATGTTCTGGCTGTGCAAGGCCGCCATCCCGCACTTGCCGCCGGGCGCATCCAT
CATCAACACCGGTTCGATCCAGTCGTACCAACCCTCGCCCACACTGCTCGACTACGCCTCCACGAAGGCGGCCATCGTCA
ACTTCACCAAGGGCCTGGCGCAGCAAGTCGCCGAGAAGGGGATCCGCGTCAATGCAGTCGCGCCCGGCCCGGTATGGACG
CCGCTGCAGCCCAGCGGTGGTCAGCCGCCGGAGAAGATTCCCGATTTCGGCTCTGAAACGCCGCTCAAGCGCGCCGGCCA
GCCGGTAGAAATGGCGCCGCTTTACGTGATTCTGGCATCGCAGGAATCGAGCTACGTCACTGGCGAAGTGTTCGGTGCCA
CCGGCGGCCTGCTGCTGTCTTGA

Upstream 100 bases:

>100_bases
TTTCGTTCACCGATACGCATCGCCCTGCTTTCCACACTGGCTGCCATCGGTACGCACGACGACTGCGTGCCTGCCCTTCC
CCCAATGCAGGAGCGTGTGC

Downstream 100 bases:

>100_bases
GTCGCACCGGCGCCGACTTCCAACGCGATGCCACCGGCACCTTGCCGATTGCTGCGTATGCGGCGATCGGCGACGGGCGC
ACGGTGGCGTTATGCGGTGC

Product: oxidoreductase

Products: NA

Alternate protein names: ORFY [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSSTKNQYEMQNPLTQFPQPQFPEQTQQAPGTIHALQPKADHGEQSYKGFGRLQGRKALVTGADSGIGRATAIAFAREGA
DIVLNYLPEEEQDAAEVVQLIQAEGRKAISVPGDLKNEAFCTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFD
ATYKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT
PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS

Sequences:

>Translated_300_residues
MSSTKNQYEMQNPLTQFPQPQFPEQTQQAPGTIHALQPKADHGEQSYKGFGRLQGRKALVTGADSGIGRATAIAFAREGA
DIVLNYLPEEEQDAAEVVQLIQAEGRKAISVPGDLKNEAFCTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFD
ATYKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT
PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS
>Mature_299_residues
SSTKNQYEMQNPLTQFPQPQFPEQTQQAPGTIHALQPKADHGEQSYKGFGRLQGRKALVTGADSGIGRATAIAFAREGAD
IVLNYLPEEEQDAAEVVQLIQAEGRKAISVPGDLKNEAFCTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFDA
TYKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWTP
LQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=29.6747967479675, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=33.852140077821, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=28.957528957529, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=31.4393939393939, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=32.3770491803279, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=27.3092369477912, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI10190704, Length=264, Percent_Identity=30.3030303030303, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=29.3859649122807, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=31.413612565445, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4758504, Length=264, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=32.258064516129, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=29.5275590551181, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=29.2553191489362, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI142976729, Length=212, Percent_Identity=29.7169811320755, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=27.8606965174129, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1789378, Length=288, Percent_Identity=61.4583333333333, Blast_Score=367, Evalue=1e-103,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=36.3265306122449, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=34.136546184739, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=31.3253012048193, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=31.3008130081301, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.1983805668016, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=28.4, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=30.5882352941176, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=29.8804780876494, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=29.7520661157025, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=27.3092369477912, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=29.3172690763052, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=31.7460317460317, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=33.4600760456274, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.8403041825095, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=34.2205323193916, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=32.3308270676692, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=33.4586466165414, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=30.3643724696356, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=34.136546184739, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=32, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=31.7164179104478, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=277, Percent_Identity=31.0469314079422, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=272, Percent_Identity=30.5147058823529, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=30.4182509505703, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.0380228136882, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.7984790874525, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=31.3432835820896, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=268, Percent_Identity=31.7164179104478, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=31.8352059925094, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.0380228136882, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=29.1666666666667, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=28.2352941176471, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=264, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=29.0566037735849, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=28.6821705426357, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=221, Percent_Identity=28.0542986425339, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.5171102661597, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=27.7372262773723, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=27.1794871794872, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=267, Percent_Identity=28.0898876404494, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=245, Percent_Identity=26.1224489795918, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=262, Percent_Identity=26.7175572519084, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561272, Length=263, Percent_Identity=28.5171102661597, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=201, Percent_Identity=29.8507462686567, Blast_Score=76, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=257, Percent_Identity=26.8482490272374, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=35.3413654618474, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=33.6065573770492, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=7e-25,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=31.3492063492063, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=33.1967213114754, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=33.0708661417323, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=30, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=31.4285714285714, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=32.5670498084291, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=30.5699481865285, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=30.5699481865285, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32010; Mature: 31878

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSSTKNQYEMQNPLTQFPQPQFPEQTQQAPGTIHALQPKADHGEQSYKGFGRLQGRKALV
CCCCCCHHHHHCHHHHCCCCCCCHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEEE
TGADSGIGRATAIAFAREGADIVLNYLPEEEQDAAEVVQLIQAEGRKAISVPGDLKNEAF
ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHH
CTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFDATYKTNVYAMFWLCKAAIPH
HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCC
LPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT
CCCCCCEEECCCCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS
CCCCCCCCCHHHCCCCCCCCCHHHCCCCCEECEEEEEEECCCCCEEEEEEECCCCCEECC
>Mature Secondary Structure 
SSTKNQYEMQNPLTQFPQPQFPEQTQQAPGTIHALQPKADHGEQSYKGFGRLQGRKALV
CCCCCHHHHHCHHHHCCCCCCCHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEEE
TGADSGIGRATAIAFAREGADIVLNYLPEEEQDAAEVVQLIQAEGRKAISVPGDLKNEAF
ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHH
CTELVDRAVKELGGLDVLVNIAGKQTAVKDIADITTEQFDATYKTNVYAMFWLCKAAIPH
HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCC
LPPGASIINTGSIQSYQPSPTLLDYASTKAAIVNFTKGLAQQVAEKGIRVNAVAPGPVWT
CCCCCCEEECCCCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PLQPSGGQPPEKIPDFGSETPLKRAGQPVEMAPLYVILASQESSYVTGEVFGATGGLLLS
CCCCCCCCCHHHCCCCCCCCCHHHCCCCCEECEEEEEEECCCCCEEEEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 8196543 [H]