| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is 21241931
Identifier: 21241931
GI number: 21241931
Start: 1339401
End: 1341206
Strand: Reverse
Name: 21241931
Synonym: XAC1177
Alternate gene names: NA
Gene position: 1341206-1339401 (Counterclockwise)
Preceding gene: 21241932
Following gene: 21241927
Centisome position: 25.91
GC content: 64.78
Gene sequence:
>1806_bases TTGAGTCGCACCGGCGCCGACTTCCAACGCGATGCCACCGGCACCTTGCCGATTGCTGCGTATGCGGCGATCGGCGACGG GCGCACGGTGGCGTTATGCGGTGCGGACGGCAGCATCGACTGGTGGTGCGTGCCGAAAATGGACTCGCCGCCGTTGTTCG ATCGTCTATTGGATGCAGGCGAAGGCGGCTATTTCACCCTCACGCCGCAACAGCTGCAGCATGTACAACGCCGATACCGC GACGGCAGCAATATTCTCGAAACGACCTTCGCCACCGCAACCGGCAGCGCACGTCTGACCGAGTCGCTCAACAGCGGCGA AGCCGGCCGGCTGCCGTGGTCGGAACTTGCGCGACGCATCGAAGGCATCGAAGGCAGCGTGGTCTTCGACCTGATCTACC GGCCCGGCACCCGTGCCGGCGAAGCCACACCCTGGCAAAGCGAGACGCCGAACGGCCGTGTGCATCACGTCGGCCCGCTC ATGACCATGCTGCGCTACGACAAGGAAGCAGCGCAGCTGCTGCAGTGCGACGACCGCGGCGTGCACGCCACGCTGGCGAT CGGCGCAGGCGACACACAGGTGGTCGCGTTGCTGGCCGCCGAAGAAGATGCGCTACCGGTGCCCGCGCTGGAAGACATCG GTGGGCGCATCGAGCGCAGCGACCAGGAGTGGCGCGAATGGAGCGGCAACCTGTCTTACGCCAATGGTTACCACGATGCG GTCGTGCGCTCTGCGCTGGCGCTCAAATTTCTATGGTTTTCGCCGACGGGCGCCATTGCCGCCGCGGTCACCACGTCATT GCCGGAGCAGATTGGCGCAAATGGCAATTGGGATTATCGCTATGCCTGGGTCCGCGATGCCGCCTACACCACCAAGGCCT TCCTGCGCGTAGGCGCATTGGCCGATGCCAAGGCTGCGTTTAGCTGGTTGATGCGCACCATCCGCCAGCATCGGCCAGGC GTGCGCCCCTGCTACACCCTGGAGGGCGCGTTGGTGCCCGACGAGCGCGTGATCGATCTTCCCGGCTATCGCAATACGCG TCCGGTGCGCGTCGGCAACACCGCCAACAACCAGCTGCAGCTGTGCCTGTACGGCGACATCTTCGAAATGGCCGCGCGCT TTCTCGATGCCGGCCACATCCTGGACCAGGAAACCGCACGCCAGTTGTTCGAGCTCGGCAACGAATGCGCAAACACCTGG ATGCGCAAGGACGCCGGCTTCTGGGAACTGGAAGCCGCCGAGCATTACACCATGTCCAAAGTGGAATGCTGGCTGGCGCT GCGCCGCGCCAGCGAGCTGGCCAAGGCCGGCCATCTCTCCACCGCGATGCTGCCACGCTGGGAGCGCGAACAGGCGCGGA TTCTGGCGTGGATCGATGTGCACTGCTGGTCCGACACCAAGCAGGCTTACACCTTCTACGCGGGCACCGACGACCTGGAC GCGAGCCTGCTGTTGGCCTCGCGCTTTGGGTTGGGCGGGCCGCGCCGCGAGCGCATGATCGCCACCCGCGATGCCATTGC CTCAGAACTCGGCAGCGATGCATTGCTGCACCGCTACAGTGGCATGCAACAACGCGAAGGGGCATTTATTGCCTGCTCGT TCTGGCTGGTGGAAGCCTATGGCCTGCTCGGCGAGCGTGCCGAAGCCAGGCGCTTGTTCGAGCAGTTGCTGGAGCAGTTG GGCAACGATGTCGCACTGATGCCCGAGATGCTGGACACGAGCACGCGCGCCGCCCTGGGCAACGTACCGCAAGGCTTGAG CCACCTCGCGCTGATCCACGCAGCGCTAGCCGTGGATGGCGAATAA
Upstream 100 bases:
>100_bases AGCCGGTAGAAATGGCGCCGCTTTACGTGATTCTGGCATCGCAGGAATCGAGCTACGTCACTGGCGAAGTGTTCGGTGCC ACCGGCGGCCTGCTGCTGTC
Downstream 100 bases:
>100_bases GCGCAGCGCAGCACCTGTCGCCTTCACCAGGTTGTTATCGCAGCAAACTCCTTCTCCACTCGGCAGAAGGAGCACGCTAG ACGGATGCGGCTGCGCCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Trehalose-Phosphatase; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; HAD Family Hydrolase; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase
Number of amino acids: Translated: 601; Mature: 600
Protein sequence:
>601_residues MSRTGADFQRDATGTLPIAAYAAIGDGRTVALCGADGSIDWWCVPKMDSPPLFDRLLDAGEGGYFTLTPQQLQHVQRRYR DGSNILETTFATATGSARLTESLNSGEAGRLPWSELARRIEGIEGSVVFDLIYRPGTRAGEATPWQSETPNGRVHHVGPL MTMLRYDKEAAQLLQCDDRGVHATLAIGAGDTQVVALLAAEEDALPVPALEDIGGRIERSDQEWREWSGNLSYANGYHDA VVRSALALKFLWFSPTGAIAAAVTTSLPEQIGANGNWDYRYAWVRDAAYTTKAFLRVGALADAKAAFSWLMRTIRQHRPG VRPCYTLEGALVPDERVIDLPGYRNTRPVRVGNTANNQLQLCLYGDIFEMAARFLDAGHILDQETARQLFELGNECANTW MRKDAGFWELEAAEHYTMSKVECWLALRRASELAKAGHLSTAMLPRWEREQARILAWIDVHCWSDTKQAYTFYAGTDDLD ASLLLASRFGLGGPRRERMIATRDAIASELGSDALLHRYSGMQQREGAFIACSFWLVEAYGLLGERAEARRLFEQLLEQL GNDVALMPEMLDTSTRAALGNVPQGLSHLALIHAALAVDGE
Sequences:
>Translated_601_residues MSRTGADFQRDATGTLPIAAYAAIGDGRTVALCGADGSIDWWCVPKMDSPPLFDRLLDAGEGGYFTLTPQQLQHVQRRYR DGSNILETTFATATGSARLTESLNSGEAGRLPWSELARRIEGIEGSVVFDLIYRPGTRAGEATPWQSETPNGRVHHVGPL MTMLRYDKEAAQLLQCDDRGVHATLAIGAGDTQVVALLAAEEDALPVPALEDIGGRIERSDQEWREWSGNLSYANGYHDA VVRSALALKFLWFSPTGAIAAAVTTSLPEQIGANGNWDYRYAWVRDAAYTTKAFLRVGALADAKAAFSWLMRTIRQHRPG VRPCYTLEGALVPDERVIDLPGYRNTRPVRVGNTANNQLQLCLYGDIFEMAARFLDAGHILDQETARQLFELGNECANTW MRKDAGFWELEAAEHYTMSKVECWLALRRASELAKAGHLSTAMLPRWEREQARILAWIDVHCWSDTKQAYTFYAGTDDLD ASLLLASRFGLGGPRRERMIATRDAIASELGSDALLHRYSGMQQREGAFIACSFWLVEAYGLLGERAEARRLFEQLLEQL GNDVALMPEMLDTSTRAALGNVPQGLSHLALIHAALAVDGE >Mature_600_residues SRTGADFQRDATGTLPIAAYAAIGDGRTVALCGADGSIDWWCVPKMDSPPLFDRLLDAGEGGYFTLTPQQLQHVQRRYRD GSNILETTFATATGSARLTESLNSGEAGRLPWSELARRIEGIEGSVVFDLIYRPGTRAGEATPWQSETPNGRVHHVGPLM TMLRYDKEAAQLLQCDDRGVHATLAIGAGDTQVVALLAAEEDALPVPALEDIGGRIERSDQEWREWSGNLSYANGYHDAV VRSALALKFLWFSPTGAIAAAVTTSLPEQIGANGNWDYRYAWVRDAAYTTKAFLRVGALADAKAAFSWLMRTIRQHRPGV RPCYTLEGALVPDERVIDLPGYRNTRPVRVGNTANNQLQLCLYGDIFEMAARFLDAGHILDQETARQLFELGNECANTWM RKDAGFWELEAAEHYTMSKVECWLALRRASELAKAGHLSTAMLPRWEREQARILAWIDVHCWSDTKQAYTFYAGTDDLDA SLLLASRFGLGGPRRERMIATRDAIASELGSDALLHRYSGMQQREGAFIACSFWLVEAYGLLGERAEARRLFEQLLEQLG NDVALMPEMLDTSTRAALGNVPQGLSHLALIHAALAVDGE
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66329; Mature: 66197
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTGADFQRDATGTLPIAAYAAIGDGRTVALCGADGSIDWWCVPKMDSPPLFDRLLDAG CCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHCC EGGYFTLTPQQLQHVQRRYRDGSNILETTFATATGSARLTESLNSGEAGRLPWSELARRI CCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHH EGIEGSVVFDLIYRPGTRAGEATPWQSETPNGRVHHVGPLMTMLRYDKEAAQLLQCDDRG CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHCCCCC VHATLAIGAGDTQVVALLAAEEDALPVPALEDIGGRIERSDQEWREWSGNLSYANGYHDA CEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHH VVRSALALKFLWFSPTGAIAAAVTTSLPEQIGANGNWDYRYAWVRDAAYTTKAFLRVGAL HHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHCH ADAKAAFSWLMRTIRQHRPGVRPCYTLEGALVPDERVIDLPGYRNTRPVRVGNTANNQLQ HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCCCCCEEECCCCCCEEE LCLYGDIFEMAARFLDAGHILDQETARQLFELGNECANTWMRKDAGFWELEAAEHYTMSK EEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH VECWLALRRASELAKAGHLSTAMLPRWEREQARILAWIDVHCWSDTKQAYTFYAGTDDLD HHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCC ASLLLASRFGLGGPRRERMIATRDAIASELGSDALLHRYSGMQQREGAFIACSFWLVEAY HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCEEEEHHHHHHHH GLLGERAEARRLFEQLLEQLGNDVALMPEMLDTSTRAALGNVPQGLSHLALIHAALAVDG HHHCCHHHHHHHHHHHHHHHCCCEEECHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCC E C >Mature Secondary Structure SRTGADFQRDATGTLPIAAYAAIGDGRTVALCGADGSIDWWCVPKMDSPPLFDRLLDAG CCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHCC EGGYFTLTPQQLQHVQRRYRDGSNILETTFATATGSARLTESLNSGEAGRLPWSELARRI CCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHH EGIEGSVVFDLIYRPGTRAGEATPWQSETPNGRVHHVGPLMTMLRYDKEAAQLLQCDDRG CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHCCCCC VHATLAIGAGDTQVVALLAAEEDALPVPALEDIGGRIERSDQEWREWSGNLSYANGYHDA CEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHH VVRSALALKFLWFSPTGAIAAAVTTSLPEQIGANGNWDYRYAWVRDAAYTTKAFLRVGAL HHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHCH ADAKAAFSWLMRTIRQHRPGVRPCYTLEGALVPDERVIDLPGYRNTRPVRVGNTANNQLQ HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCCCCCEEECCCCCCEEE LCLYGDIFEMAARFLDAGHILDQETARQLFELGNECANTWMRKDAGFWELEAAEHYTMSK EEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH VECWLALRRASELAKAGHLSTAMLPRWEREQARILAWIDVHCWSDTKQAYTFYAGTDDLD HHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCC ASLLLASRFGLGGPRRERMIATRDAIASELGSDALLHRYSGMQQREGAFIACSFWLVEAY HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCEEEEHHHHHHHH GLLGERAEARRLFEQLLEQLGNDVALMPEMLDTSTRAALGNVPQGLSHLALIHAALAVDG HHHCCHHHHHHHHHHHHHHHCCCEEECHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA