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The map label for this gene is ompR [H]

Identifier: 21241501

GI number: 21241501

Start: 870648

End: 871367

Strand: Reverse

Name: ompR [H]

Synonym: XAC0730

Alternate gene names: 21241501

Gene position: 871367-870648 (Counterclockwise)

Preceding gene: 21241508

Following gene: 21241500

Centisome position: 16.84

GC content: 65.56

Gene sequence:

>720_bases
ATGGACCTGCAACAACCCTGCGTTCTCGTGGTCGACGACGACCCGGACCTGCGCAAGCTGATCGGCGAATTTCTGAGCGC
CCACGGCTACCAGGTGGATATGGCCGAAAACGTGGCGGAGATGCGCTCTGTCATGGCGCAGCGCCGCCCGGACCTCATCG
TACTCGACGTGATGATGCCGGGAGAAGATGGGCTGAGTGCAGCGCGCGCCCTGGCCAGCGAGCGCGGTTCACCTGCGGTC
ATCATGCTCAGCGCGCTGGGTAACGACACCGACCGCATCATCGGCCTGGAAGTCGGCGCCGACGATTACCTCGCCAAGCC
CTGCAATCCGCGCGAATTGCTGGCGCGTGTGCGCGCCCTGCTGCGGCGCAGCCAGGCCAGCAACGAACAGGCCGACCAGC
GCGGAAACGTCTACGAATTCGCCGGCTGGCGGCTGGACGTGGTACGCCGCGACCTGCGCGACCCTACCGGCATCTTCATC
AATCTGTCCGACGGCGAGTTCGCGCTGCTGCGCACCTTCGTCGAACACCCGCAGCGCGTGCTCAGCCGCGACCAGTTGCT
GGACTACGCCCGTGGCCGCGACACCGACGTCTACGACCGCGCCATCGACAGCCAGATCAGCCGCCTGCGCCGCAAAATCA
ATGAGCGCGTCCATACCGAATTGATTCGCACCGTACGCAACGAGGGCTACATGCTGCTGCCGAGCGTCTCGCGCCTGTGA

Upstream 100 bases:

>100_bases
TCATTATGATGCGTGCTCCAGCCCTGCAATTGCGAGCACCATGTATCCGGCAGCCACCACCTTGCGCGGGCCAAGCGCCG
CGCCACAGACGATGATCCCT

Downstream 100 bases:

>100_bases
GCAAACCGGCACGGCGCGGGCTGTCGATCTTTGCGCGGACCTTTGTATTGTTGGCGGTGGCCCTGCTCACCGCCCAGGCG
GTGGGCATCGCCCTGCTGGT

Product: two-component system regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MDLQQPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSAARALASERGSPAV
IMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQASNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFI
NLSDGEFALLRTFVEHPQRVLSRDQLLDYARGRDTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYMLLPSVSRL

Sequences:

>Translated_239_residues
MDLQQPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSAARALASERGSPAV
IMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQASNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFI
NLSDGEFALLRTFVEHPQRVLSRDQLLDYARGRDTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYMLLPSVSRL
>Mature_239_residues
MDLQQPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSAARALASERGSPAV
IMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQASNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFI
NLSDGEFALLRTFVEHPQRVLSRDQLLDYARGRDTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYMLLPSVSRL

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=238, Percent_Identity=44.1176470588235, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=37.2294372294372, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=37.3913043478261, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788394, Length=238, Percent_Identity=35.2941176470588, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1787229, Length=233, Percent_Identity=37.3390557939914, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=38.961038961039, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=36.4444444444444, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI145693140, Length=239, Percent_Identity=32.2175732217573, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790860, Length=233, Percent_Identity=33.4763948497854, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787375, Length=229, Percent_Identity=32.7510917030568, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=33.0357142857143, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=32.5991189427313, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786911, Length=208, Percent_Identity=31.7307692307692, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=33.0434782608696, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790299, Length=135, Percent_Identity=30.3703703703704, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=28.3018867924528, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27060; Mature: 27060

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQQPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMP
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCEEEEEEEEC
GEDGLSAARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRAL
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHH
LRRSQASNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRV
HHHHHCCCHHHHHCCCEEEECCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
LSRDQLLDYARGRDTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYMLLPSVSRL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
>Mature Secondary Structure
MDLQQPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMP
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCEEEEEEEEC
GEDGLSAARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRAL
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHH
LRRSQASNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRV
HHHHHCCCHHHHHCCCEEEECCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
LSRDQLLDYARGRDTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYMLLPSVSRL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]