Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 21241508

GI number: 21241508

Start: 877322

End: 878722

Strand: Reverse

Name: ydcR [H]

Synonym: XAC0737

Alternate gene names: 21241508

Gene position: 878722-877322 (Counterclockwise)

Preceding gene: 21241511

Following gene: 21241501

Centisome position: 16.98

GC content: 67.31

Gene sequence:

>1401_bases
ATGCTCTTGTACGAATCGCTCGCCATGCGGCTGCGCGAGCAGATCGAGCGTGGCACGTTGCGTGCCGGCGAGCGCCTGCC
CTCGATCCGGCAGCTGGCCGCCAATCACGGCATCAGCGCGGCCACGGCGGTGCAGGCGTGTCTGCAACTCGAGCGCGAAG
GACGCGTCCAGGCGCGACCGCGCGCGGGCTACTTCGTGCGCGCCACGGCCGTTGCATCGCCTGCCGCGCCACCTGCGCCG
CGTCGACGCACGCCTGGTATGGTCGATCATCCGGCATTGCAGCGCGTGCTCGACACCGTGGCGCGCACCGACCTGTTGCC
GCTGCACACCGCCACTCCTGCGCCGGCCCTGTTACCCGCCGCGCACCTGGCCGCCGCATTGTCGCGTCAGGTGCGGCGCC
AGCGCACTGCCGCACTGGATTACGCGCCACCGCAAGGTCACGCCGCGCTGCGGCGGCAAATCGCACAACGCTACGCGCAT
TGCGCCACCAGCGTGACTACGGACGAAGTGGTAATCACCGCCGGCGCGATGGAGGCCATCAGCCTGGCATTGCGCACACT
CACCATGCCCGGCGATGTCGTTCTGGTGGAAACTCCCACGTATCACGGCATTTTGCAGGCGATGGCCGCATTGCGTCTCA
AGGTGCTGGAGGTGCCCAACCGCAGCGGCCAGGGGATCGATATCGCGCGCCTGGAGTCGCTACTGCAACGCACGAAGGTG
CGCGCCGCCGTGCTGGTGCCCAATTTCAATAATCCCATTGGAAGCCTCACTCCCGACAGCGCCAAGCGCGCCCTGCTCGA
CAGCTGCGCGCGACATGGCACGGTGGTGATCGAAGACGATATCTACGGCGAGCTCGATTGGTCGGGCCAGCGCCCACGTC
CGCTGCGCCACTTCGATACGCATGCCAACGTGATCACCTGCGGCTCGTTCTCCAAGGTACTGGCCCCGGGCCTGCGCGTG
GGCTGGTTGCTCGGAGGCGACTGGACCGACGCACTGGTGCGCGCCAAATATTTTTCCACAGTTGGCAGTGCCAGCCTGCC
GCAACTGGCGCTGGCCGATTACCTGGCGCATCACGATCTGGAACGCCACCTGCGCAAGCTGCGGCGCACACTGGCCAACA
ACGGGCAACGCCTGCGCGATGCGATCGTGCGGTACTGGCCACACGGCACGCGCGTCGGCGACCCCGCTGGCGGATTGTCG
CTCTGGCTGCAATTGCCCGCAGGCGGCAGCGGCCAGGCGTTGTTCGAAGCGGCACTGACCGAACGCATCGGCACCTCGCC
CGGGCATTTGTATTCCAGCCGTGGCGACTACGCCGACCACCTGCGTCTGAGCTGCGGCCAGCCGTGGAGCGACATCCTGG
AAGCGGCAATGCGCCGGCTGGGCAAACTGGCTGCACGATGA

Upstream 100 bases:

>100_bases
CCGACACGCGGGCCGGCACAGCAGCAGTGTGCAGCGCTGCCCCCGACCAGTACAGATTCAGATACGCTACAAATCAACCA
GTACAGATAAGGCGCCTTCA

Downstream 100 bases:

>100_bases
TCGCGTTGAAACGCCGCCCGCGGACGTTCACAGGCATCACGCAGATGGCTGGTTCGCACCGACACTGCGTTGTCCATCAA
ACTGCGTTTTCGATCAATAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MLLYESLAMRLREQIERGTLRAGERLPSIRQLAANHGISAATAVQACLQLEREGRVQARPRAGYFVRATAVASPAAPPAP
RRRTPGMVDHPALQRVLDTVARTDLLPLHTATPAPALLPAAHLAAALSRQVRRQRTAALDYAPPQGHAALRRQIAQRYAH
CATSVTTDEVVITAGAMEAISLALRTLTMPGDVVLVETPTYHGILQAMAALRLKVLEVPNRSGQGIDIARLESLLQRTKV
RAAVLVPNFNNPIGSLTPDSAKRALLDSCARHGTVVIEDDIYGELDWSGQRPRPLRHFDTHANVITCGSFSKVLAPGLRV
GWLLGGDWTDALVRAKYFSTVGSASLPQLALADYLAHHDLERHLRKLRRTLANNGQRLRDAIVRYWPHGTRVGDPAGGLS
LWLQLPAGGSGQALFEAALTERIGTSPGHLYSSRGDYADHLRLSCGQPWSDILEAAMRRLGKLAAR

Sequences:

>Translated_466_residues
MLLYESLAMRLREQIERGTLRAGERLPSIRQLAANHGISAATAVQACLQLEREGRVQARPRAGYFVRATAVASPAAPPAP
RRRTPGMVDHPALQRVLDTVARTDLLPLHTATPAPALLPAAHLAAALSRQVRRQRTAALDYAPPQGHAALRRQIAQRYAH
CATSVTTDEVVITAGAMEAISLALRTLTMPGDVVLVETPTYHGILQAMAALRLKVLEVPNRSGQGIDIARLESLLQRTKV
RAAVLVPNFNNPIGSLTPDSAKRALLDSCARHGTVVIEDDIYGELDWSGQRPRPLRHFDTHANVITCGSFSKVLAPGLRV
GWLLGGDWTDALVRAKYFSTVGSASLPQLALADYLAHHDLERHLRKLRRTLANNGQRLRDAIVRYWPHGTRVGDPAGGLS
LWLQLPAGGSGQALFEAALTERIGTSPGHLYSSRGDYADHLRLSCGQPWSDILEAAMRRLGKLAAR
>Mature_466_residues
MLLYESLAMRLREQIERGTLRAGERLPSIRQLAANHGISAATAVQACLQLEREGRVQARPRAGYFVRATAVASPAAPPAP
RRRTPGMVDHPALQRVLDTVARTDLLPLHTATPAPALLPAAHLAAALSRQVRRQRTAALDYAPPQGHAALRRQIAQRYAH
CATSVTTDEVVITAGAMEAISLALRTLTMPGDVVLVETPTYHGILQAMAALRLKVLEVPNRSGQGIDIARLESLLQRTKV
RAAVLVPNFNNPIGSLTPDSAKRALLDSCARHGTVVIEDDIYGELDWSGQRPRPLRHFDTHANVITCGSFSKVLAPGLRV
GWLLGGDWTDALVRAKYFSTVGSASLPQLALADYLAHHDLERHLRKLRRTLANNGQRLRDAIVRYWPHGTRVGDPAGGLS
LWLQLPAGGSGQALFEAALTERIGTSPGHLYSSRGDYADHLRLSCGQPWSDILEAAMRRLGKLAAR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=332, Percent_Identity=26.8072289156627, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI7705897, Length=352, Percent_Identity=24.7159090909091, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI33469970, Length=352, Percent_Identity=24.7159090909091, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI1787710, Length=466, Percent_Identity=38.8412017167382, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1790797, Length=473, Percent_Identity=35.7293868921776, Blast_Score=294, Evalue=7e-81,
Organism=Escherichia coli, GI1786816, Length=246, Percent_Identity=28.4552845528455, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567663, Length=335, Percent_Identity=26.5671641791045, Blast_Score=96, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6321000, Length=322, Percent_Identity=24.223602484472, Blast_Score=73, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21356535, Length=336, Percent_Identity=24.4047619047619, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI18859735, Length=227, Percent_Identity=30.3964757709251, Blast_Score=88, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50650; Mature: 50650

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLYESLAMRLREQIERGTLRAGERLPSIRQLAANHGISAATAVQACLQLEREGRVQARP
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
RAGYFVRATAVASPAAPPAPRRRTPGMVDHPALQRVLDTVARTDLLPLHTATPAPALLPA
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
AHLAAALSRQVRRQRTAALDYAPPQGHAALRRQIAQRYAHCATSVTTDEVVITAGAMEAI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
SLALRTLTMPGDVVLVETPTYHGILQAMAALRLKVLEVPNRSGQGIDIARLESLLQRTKV
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
RAAVLVPNFNNPIGSLTPDSAKRALLDSCARHGTVVIEDDIYGELDWSGQRPRPLRHFDT
CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCHHHCC
HANVITCGSFSKVLAPGLRVGWLLGGDWTDALVRAKYFSTVGSASLPQLALADYLAHHDL
CCCEEEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ERHLRKLRRTLANNGQRLRDAIVRYWPHGTRVGDPAGGLSLWLQLPAGGSGQALFEAALT
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
ERIGTSPGHLYSSRGDYADHLRLSCGQPWSDILEAAMRRLGKLAAR
HHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLYESLAMRLREQIERGTLRAGERLPSIRQLAANHGISAATAVQACLQLEREGRVQARP
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
RAGYFVRATAVASPAAPPAPRRRTPGMVDHPALQRVLDTVARTDLLPLHTATPAPALLPA
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
AHLAAALSRQVRRQRTAALDYAPPQGHAALRRQIAQRYAHCATSVTTDEVVITAGAMEAI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
SLALRTLTMPGDVVLVETPTYHGILQAMAALRLKVLEVPNRSGQGIDIARLESLLQRTKV
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
RAAVLVPNFNNPIGSLTPDSAKRALLDSCARHGTVVIEDDIYGELDWSGQRPRPLRHFDT
CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCHHHCC
HANVITCGSFSKVLAPGLRVGWLLGGDWTDALVRAKYFSTVGSASLPQLALADYLAHHDL
CCCEEEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
ERHLRKLRRTLANNGQRLRDAIVRYWPHGTRVGDPAGGLSLWLQLPAGGSGQALFEAALT
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
ERIGTSPGHLYSSRGDYADHLRLSCGQPWSDILEAAMRRLGKLAAR
HHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]