Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 57237378

GI number: 57237378

Start: 334370

End: 334720

Strand: Direct

Name: yoaB [C]

Synonym: CJE0372

Alternate gene names: 57237378

Gene position: 334370-334720 (Clockwise)

Preceding gene: 57237377

Following gene: 57237385

Centisome position: 18.81

GC content: 33.62

Gene sequence:

>351_bases
ATGATAAAGCGTTTTGATGAGTGCGATAGAATGTCGCAAATTATTGTTTTTGATAAATATTTTAAGACTGCAGGACAAGT
GGCTTTTGAACCTAGCGGAGATATTAAAAAACAAACCAAAGAAGCACTTGCAGAACTTGATGCTTTGTTTGAAAAAATAG
GCGCAAGCAAAGGAGATTTGATTCAAATTCAAATCTGGTTAGCTAATATGCAAGATTTTGATGCAATGAATGAAACTTAT
GATGCTTGGATTAAAAATTATCCTAAACCTGTTAGAGCTTGTGTAGGAAGTGCTTTAGCAGAGGGTTATTTGGTAGAAAT
TCAAGCTTTTGGAAAGCTAAGAGAGAATTAA

Upstream 100 bases:

>100_bases
GAATTTTAGGAGGAATTCGTGCAAGTATTTATAATGCGCTTAATTTGGATCAGGTAAAAACCTTGTGTGAATTTATGAAA
GAATTTCAAGGAAAATATGC

Downstream 100 bases:

>100_bases
AAATTCTCTCCTCCAAATTTTAAAAGCGCAGATCCCCAAGTAAAACCACCGCCAAAAGCATCTAGTAAGATCAGATTTCC
TTTTTTAAGTCGTCCTTCTT

Product: endoribonuclease L-PSP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALAELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETY
DAWIKNYPKPVRACVGSALAEGYLVEIQAFGKLREN

Sequences:

>Translated_116_residues
MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALAELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETY
DAWIKNYPKPVRACVGSALAEGYLVEIQAFGKLREN
>Mature_116_residues
MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALAELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETY
DAWIKNYPKPVRACVGSALAEGYLVEIQAFGKLREN

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=108, Percent_Identity=35.1851851851852, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13189; Mature: 13189

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALAELDALFEKIGASKGDL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE
IQIQIWLANMQDFDAMNETYDAWIKNYPKPVRACVGSALAEGYLVEIQAFGKLREN
EEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEHHHHHHHCCC
>Mature Secondary Structure
MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALAELDALFEKIGASKGDL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE
IQIQIWLANMQDFDAMNETYDAWIKNYPKPVRACVGSALAEGYLVEIQAFGKLREN
EEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA