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The map label for this gene is bioD

Identifier: 57237359

GI number: 57237359

Start: 316533

End: 317138

Strand: Reverse

Name: bioD

Synonym: CJE0353

Alternate gene names: 57237359

Gene position: 317138-316533 (Counterclockwise)

Preceding gene: 57237360

Following gene: 57237357

Centisome position: 17.84

GC content: 29.21

Gene sequence:

>606_bases
GTGCAAATTTATGTGAGTGGAATACATACTGATGTAGGAAAAACACATTTTAGTGCAGCTTTTTGTGCGAATTTTAACTA
TGATTATTTTAAACTCATTCAAGCAGGAACTCCAACAGATAGCGAGTTTATTGCAAAATTTAGCCCAAAAACAAAGATTT
TTAAAGAAGGTATTTTTTTGCAAACTCCAGCTTCTCCTCATCTTGGAAAAATCAAAGAAAAGCTTGATTATAAAGCCTTA
GATATCATTTTACCAAAAAGCAAAAACCTACTTATTGAGCTTGCGGGTGGGCTTTTTTCTCCTATGGATGAAAATTACAC
TATGATTGATTTTGTGAATATTTTCAAACACCCTACGATTTTGGTAGCAAAATACTATCTTGGAAGCATTAATCATATCT
TGCTTAGCATTGAAGCTTTAAAGCAAAGAAATATCAACCTTTTAGCCCTTGTAATGATGGGTAAAAAAGATATCTTACAA
GATGATTTTATAAAAAATTATGCAAAAATTCCTATAATCAATCTTGATTTTTTTGATGAAAATAGCATTTTAAATAAAGA
TTTTAAAGAGCAAATGCAAGAAATTTTACAACTTAAAATTCCTTAA

Upstream 100 bases:

>100_bases
GCTTTTTTATAAAGAAAGTAAAAGTTTTTTAAAACTTTTTTTAATCACTGTGATTATTGCTTGTACAGTAGGTTTAAAAT
TTCTTTCTTAAGGATTTTTT

Downstream 100 bases:

>100_bases
AAATCTGCTCTAAACTCTCTAGTACATAAACGATTTGTTCTTTTGTGATGATGTAAGGAGGCATAAAATAAATCGTATTT
GCTAAAGGTCTTAAAAGCAA

Product: dethiobiotin synthetase

Products: NA

Alternate protein names: DTB synthetase; DTBS; Dethiobiotin synthase

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFIAKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKAL
DIILPKSKNLLIELAGGLFSPMDENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP

Sequences:

>Translated_201_residues
MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFIAKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKAL
DIILPKSKNLLIELAGGLFSPMDENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP
>Mature_201_residues
MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFIAKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKAL
DIILPKSKNLLIELAGGLFSPMDENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP

Specific function: Bioconversion of pimelate into dethiobiotin. [C]

COG id: COG0132

COG function: function code H; Dethiobiotin synthetase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dethiobiotin synthetase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BIOD_CAMJ8 (A8FK97)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001481861.1
- ProteinModelPortal:   A8FK97
- STRING:   A8FK97
- GeneID:   5616988
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_0285
- eggNOG:   COG0132
- HOGENOM:   HBG650065
- OMA:   WKPIQSG
- ProtClustDB:   CLSK878731
- BioCyc:   CJEJ407148:C8J_0285-MONOMER
- HAMAP:   MF_00336
- InterPro:   IPR004472
- PIRSF:   PIRSF006755
- TIGRFAMs:   TIGR00347

Pfam domain/function: NA

EC number: =6.3.3.3

Molecular weight: Translated: 22983; Mature: 22983

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFIAKFSPKTKIFKEGIFL
CEEEEEECCCCCCCHHHCEEEEECCCCHHEEEEECCCCCCHHHHHHCCCCHHHHHCCEEE
QTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPMDENYTMIDFVNIFKHPTI
ECCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEHHHHHHHHCCCHH
LVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQDDFIKNYAKIPIINLDFFDE
EEHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCC
NSILNKDFKEQMQEILQLKIP
CCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFIAKFSPKTKIFKEGIFL
CEEEEEECCCCCCCHHHCEEEEECCCCHHEEEEECCCCCCHHHHHHCCCCHHHHHCCEEE
QTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPMDENYTMIDFVNIFKHPTI
ECCCCCCHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEHHHHHHHHCCCHH
LVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQDDFIKNYAKIPIINLDFFDE
EEHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCC
NSILNKDFKEQMQEILQLKIP
CCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA