Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21228480

Identifier: 21228480

GI number: 21228480

Start: 2835346

End: 2836482

Strand: Direct

Name: 21228480

Synonym: MM_2378

Alternate gene names: NA

Gene position: 2835346-2836482 (Clockwise)

Preceding gene: 21228477

Following gene: 21228481

Centisome position: 69.22

GC content: 46.61

Gene sequence:

>1137_bases
ATGCAGACTCTGGTTATATGCATAGACAGGGATAATGATCTCGGCGAAAAAGCAAAAATGGTAACTCCTATTGTAGGGAG
GGAGGCAAATATCCAGGCAGCTGTTGCACTCGGAATTGCCGATCCCGAGGATTCGGATACAAATACTATTTTCGGAGGGA
TCCGTATCCTTGATGAGCTTCGGGCAAAAGGAGTTGATGCTGAGATCGTCTCTTTTGCAGGGGACAAGAATGTTGGAGTA
ATCTCTGACCAGAAAATTGCCGAACAGCTCGAGCTCTATCTCCAGATGAACGAGGTGCAGAGAGCGGTCTTTGTTTCTGA
CGGGGCTGAGGACGAGACTCTTGTACCTATAGTTCAGTCCAGAATGAAAATCGATTCCGTGAAGCGGATTGTCGTTATGC
AGAGTGCAAACCTGGAAAGCACTTATTATATCCTCAAACACGCTTTCAGTGACCCAAAAATCTCCCAGACTTTCTTTGTG
CCCCTTGGGCTTGCTTTTCTTATATACGCCATCTTCCTGCTTGCCCGCTATCCCGAAGGGGCAATTGTGGGAATTCTCGC
GGCTGTAGGGCTGTACATGCTTTACAGGGGCTTCGGGCTTGATGATATTGTTGCCCTTGAAAAAGAAAAGCTCTGGGATG
CTTTCCTTGAGCAGAGGATGGTTTTCATCAGCTACACTGCTGCCCTGCTTGTCAGTCTTGTAGCAACAGTATATGGAGCT
ATGGAAGTCTGGAAGTTATATTCTGCAGAAGGGGTCTGGTACCACGGTACCCTTACTCTTATCTCAGTTTTCGTCAATGT
CTCCATCTGGTGGTATGCAGTAGCTCTGCTGCTCGCTAACATGGGAAAGATCTTCGATCTTAAAACAGATGGCAGGCCCA
TTTATAGAAATATTTCAATTTCTCTCTTCGTGATTGCAACAGGTCTGCTCTTCTGGGGAGCCAGCACATATATCCTGGCA
GCGGCTTCCATATCTGATGGAGTGTTAGGCGATCCTACCCTTGCACTGCAGTACTTCGTTTATTCGATCGCTGTTTCCAT
TCTCATTGCCCTTGCAGGGATAAAATATTCCCTTTCAAACCAGACCCCGGAAAACGAGAAGAGTGTGAGAGGAAGAAAAA
GTAAAAAGATCGCATGA

Upstream 100 bases:

>100_bases
TCGAAAGCTCAGACAGGAATATAATAAAAACGAAGCGGTATAATTCATAATAAAGATCAGCTCCCCGGGCAGGATGCTTT
CATAAAATGATTGAGGAAAC

Downstream 100 bases:

>100_bases
ACCTGTGTCCCATCAGCCGGAAATTATGAATTTTCATTAAAAACGCAGGAACGGAGACCCAAAAATGGATAAGATAGATG
AGATTGCAGAAATTGCAGTT

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDELRAKGVDAEIVSFAGDKNVGV
ISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFV
PLGLAFLIYAIFLLARYPEGAIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA
MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISISLFVIATGLLFWGASTYILA
AASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSNQTPENEKSVRGRKSKKIA

Sequences:

>Translated_378_residues
MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDELRAKGVDAEIVSFAGDKNVGV
ISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFV
PLGLAFLIYAIFLLARYPEGAIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA
MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISISLFVIATGLLFWGASTYILA
AASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSNQTPENEKSVRGRKSKKIA
>Mature_378_residues
MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDELRAKGVDAEIVSFAGDKNVGV
ISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFV
PLGLAFLIYAIFLLARYPEGAIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA
MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISISLFVIATGLLFWGASTYILA
AASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSNQTPENEKSVRGRKSKKIA

Specific function: Unknown

COG id: COG2237

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1032 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007254 [H]

Pfam domain/function: PF04123 DUF373 [H]

EC number: NA

Molecular weight: Translated: 41599; Mature: 41599

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDEL
CCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
RAKGVDAEIVSFAGDKNVGVISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQS
HHCCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHH
RMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFVPLGLAFLIYAIFLLARYPEG
HHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC
AIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISI
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCE
SLFVIATGLLFWGASTYILAAASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSN
EHHHHHHHHHHHCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCC
QTPENEKSVRGRKSKKIA
CCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDEL
CCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
RAKGVDAEIVSFAGDKNVGVISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQS
HHCCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHH
RMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFVPLGLAFLIYAIFLLARYPEG
HHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC
AIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISI
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCE
SLFVIATGLLFWGASTYILAAASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSN
EHHHHHHHHHHHCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCC
QTPENEKSVRGRKSKKIA
CCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]