| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21228479
Identifier: 21228479
GI number: 21228479
Start: 2834393
End: 2834785
Strand: Reverse
Name: 21228479
Synonym: MM_2377
Alternate gene names: NA
Gene position: 2834785-2834393 (Counterclockwise)
Preceding gene: 21228487
Following gene: 21228478
Centisome position: 69.2
GC content: 38.42
Gene sequence:
>393_bases ATGCAGTCATACGCAGGTTTTTTCAGAAGGCTGGTAGCTTCGATAATTGACATATTTATAATCATTCTTCTGATGGCATT TATTCAGTTTGTAACAGGAATAAGGGAAGAAATATTTTACTACGTCCTGATAATTCTGTTTTCCTTGAGTTATTTTGCCT ATCAGGAGAGTTCAGTCTATCAGGGGACGGTTGGAAAACAGGCAATGAATATCATCATAACCGATCTTGACGGGAGAAGA ATCTCTTTTGCCTGTGCGACAAAAAGATTTATGGTGAAGGTTCTGGCATCTCTGCCTTTCTTTGCAGGTTTTTTGCCAGT ATTTATCAATAAAAACAGGCAGGGAATCCACGATAAAATTGCAAAAACTCTTGTCATAGTCCGGGAAGACTGA
Upstream 100 bases:
>100_bases TCAATTATCATAATGAAATCATTTTTACCACAACAGATAGATTTTTTAACAGAAACCTGCTTAGTAGATAAAATATATTA GAAGAAGAACAGGGAAAAAT
Downstream 100 bases:
>100_bases ATTTTGAGAAGGAGTTTTCTTTTTATATTAAGCCTTTATGTCTGATTTCCAGCCCTGTATTCCGCGCAGCCTTATTTTGA GGCAATTATGATGATTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: RDD Domain-Containing Protein
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MQSYAGFFRRLVASIIDIFIIILLMAFIQFVTGIREEIFYYVLIILFSLSYFAYQESSVYQGTVGKQAMNIIITDLDGRR ISFACATKRFMVKVLASLPFFAGFLPVFINKNRQGIHDKIAKTLVIVRED
Sequences:
>Translated_130_residues MQSYAGFFRRLVASIIDIFIIILLMAFIQFVTGIREEIFYYVLIILFSLSYFAYQESSVYQGTVGKQAMNIIITDLDGRR ISFACATKRFMVKVLASLPFFAGFLPVFINKNRQGIHDKIAKTLVIVRED >Mature_130_residues MQSYAGFFRRLVASIIDIFIIILLMAFIQFVTGIREEIFYYVLIILFSLSYFAYQESSVYQGTVGKQAMNIIITDLDGRR ISFACATKRFMVKVLASLPFFAGFLPVFINKNRQGIHDKIAKTLVIVRED
Specific function: Unknown
COG id: COG1714
COG function: function code S; Predicted membrane protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14937; Mature: 14937
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSYAGFFRRLVASIIDIFIIILLMAFIQFVTGIREEIFYYVLIILFSLSYFAYQESSVY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QGTVGKQAMNIIITDLDGRRISFACATKRFMVKVLASLPFFAGFLPVFINKNRQGIHDKI CCHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH AKTLVIVRED HHHHHHEECC >Mature Secondary Structure MQSYAGFFRRLVASIIDIFIIILLMAFIQFVTGIREEIFYYVLIILFSLSYFAYQESSVY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QGTVGKQAMNIIITDLDGRRISFACATKRFMVKVLASLPFFAGFLPVFINKNRQGIHDKI CCHHHHHHHHHEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH AKTLVIVRED HHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA