| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228322
Identifier: 21228322
GI number: 21228322
Start: 2645883
End: 2646776
Strand: Reverse
Name: 21228322
Synonym: MM_2220
Alternate gene names: NA
Gene position: 2646776-2645883 (Counterclockwise)
Preceding gene: 21228323
Following gene: 21228321
Centisome position: 64.61
GC content: 38.37
Gene sequence:
>894_bases ATGAAATGGAAAACGGCAATTAAAGTTGCAGTTACCTCTGGATTAATGCTTTACCTGATAAGCAAACTCGATGTGAATGC AATCTATGAAGCCTTTATTCAAATGGACCTGGCATTACTTTCTCTTTCATTACCTTTCATTGCCCTGATGTATTTAATAA AAGCAAGGAAGTGGCAGGCACTGCTTGATTGTATAAATGTCAGGATCCCGATCAGAAGATCACTGGAGATAATTCTGATA GGTACATTCTATGGAGCACTTACTCCGGGCAGGGCAGGAGAGGTTTCAAGAGCTTTTTATCTTGATGCTGAAAAATCCAG GAGCATTCCCACTGTAATAATGGACAGGGTTATAGATGTTATCTGTCTCCTGACATTGAGTGTCCTATCAACCGCCCTGT TCTTTAAAGACAGAAGCCTGATTTATCTGATGGTTTTAGCTGTGCCGCTTTTCATTTCCGGGATAGTTATCACCATGAAT GAGAGAATAGTAAGCTTTGCTTTCAAGAGCTTTTCTCAGGGAAAAGAATACACAGAAAATTACATGAAAACAATAAGGGA GATAACAGGAAATAGAAAAGTTCTGCTTTTTACTTTTTCTTTAACTCTTGGCTATTATATCCTGAACCTCATTGTGTACT GGATAGTGATAAAATCCCTGAGCCCGGCTTTAAATAATATCCTTACCTTCTCCCTGCCTATAATAGTAATCCTGGGAAAT TTTCCCATATCCATATCAGGATTCGGAGTCAGAGAGTTTGCAAGTGTCACTATTTTCCAGATGCTGAACGAGAATTCAGC CTATGGGTTCACATGTCCAGTAGTCCTTTACCTTTTAACTTCCCTTTCTCCTGCATTACTTGGATTTTTATTTACTTTAA GAAAAAAAGTTTGA
Upstream 100 bases:
>100_bases CTTACGGTAATAGGAGCCCAGTTTGTTTCTCTAGGTCTTATAGGAGAACTGATTACAAACTCGAGAAACAATGATGATTA TATTATAAAGTACGATAGCT
Downstream 100 bases:
>100_bases AAATTAAGCTATAAAGCTCAAATCAAGGATGAATCGGGAATAAATCAGGAAATAAATAAAGGATAAATCAGGAATAAATC AAAGATAAATCAGGAAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MKWKTAIKVAVTSGLMLYLISKLDVNAIYEAFIQMDLALLSLSLPFIALMYLIKARKWQALLDCINVRIPIRRSLEIILI GTFYGALTPGRAGEVSRAFYLDAEKSRSIPTVIMDRVIDVICLLTLSVLSTALFFKDRSLIYLMVLAVPLFISGIVITMN ERIVSFAFKSFSQGKEYTENYMKTIREITGNRKVLLFTFSLTLGYYILNLIVYWIVIKSLSPALNNILTFSLPIIVILGN FPISISGFGVREFASVTIFQMLNENSAYGFTCPVVLYLLTSLSPALLGFLFTLRKKV
Sequences:
>Translated_297_residues MKWKTAIKVAVTSGLMLYLISKLDVNAIYEAFIQMDLALLSLSLPFIALMYLIKARKWQALLDCINVRIPIRRSLEIILI GTFYGALTPGRAGEVSRAFYLDAEKSRSIPTVIMDRVIDVICLLTLSVLSTALFFKDRSLIYLMVLAVPLFISGIVITMN ERIVSFAFKSFSQGKEYTENYMKTIREITGNRKVLLFTFSLTLGYYILNLIVYWIVIKSLSPALNNILTFSLPIIVILGN FPISISGFGVREFASVTIFQMLNENSAYGFTCPVVLYLLTSLSPALLGFLFTLRKKV >Mature_297_residues MKWKTAIKVAVTSGLMLYLISKLDVNAIYEAFIQMDLALLSLSLPFIALMYLIKARKWQALLDCINVRIPIRRSLEIILI GTFYGALTPGRAGEVSRAFYLDAEKSRSIPTVIMDRVIDVICLLTLSVLSTALFFKDRSLIYLMVLAVPLFISGIVITMN ERIVSFAFKSFSQGKEYTENYMKTIREITGNRKVLLFTFSLTLGYYILNLIVYWIVIKSLSPALNNILTFSLPIIVILGN FPISISGFGVREFASVTIFQMLNENSAYGFTCPVVLYLLTSLSPALLGFLFTLRKKV
Specific function: Unknown
COG id: COG0392
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33457; Mature: 33457
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWKTAIKVAVTSGLMLYLISKLDVNAIYEAFIQMDLALLSLSLPFIALMYLIKARKWQA CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDCINVRIPIRRSLEIILIGTFYGALTPGRAGEVSRAFYLDAEKSRSIPTVIMDRVIDV HHHHHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHH ICLLTLSVLSTALFFKDRSLIYLMVLAVPLFISGIVITMNERIVSFAFKSFSQGKEYTEN HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCHHHHHH YMKTIREITGNRKVLLFTFSLTLGYYILNLIVYWIVIKSLSPALNNILTFSLPIIVILGN HHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEC FPISISGFGVREFASVTIFQMLNENSAYGFTCPVVLYLLTSLSPALLGFLFTLRKKV CCEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure MKWKTAIKVAVTSGLMLYLISKLDVNAIYEAFIQMDLALLSLSLPFIALMYLIKARKWQA CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDCINVRIPIRRSLEIILIGTFYGALTPGRAGEVSRAFYLDAEKSRSIPTVIMDRVIDV HHHHHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHH ICLLTLSVLSTALFFKDRSLIYLMVLAVPLFISGIVITMNERIVSFAFKSFSQGKEYTEN HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCHHHHHH YMKTIREITGNRKVLLFTFSLTLGYYILNLIVYWIVIKSLSPALNNILTFSLPIIVILGN HHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEC FPISISGFGVREFASVTIFQMLNENSAYGFTCPVVLYLLTSLSPALLGFLFTLRKKV CCEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA