| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228064
Identifier: 21228064
GI number: 21228064
Start: 2331601
End: 2332773
Strand: Reverse
Name: 21228064
Synonym: MM_1962
Alternate gene names: NA
Gene position: 2332773-2331601 (Counterclockwise)
Preceding gene: 21228065
Following gene: 21228063
Centisome position: 56.95
GC content: 39.9
Gene sequence:
>1173_bases ATGAAATATATTTACCAGGACTCTACGGAACTGCCTGTCCAGAGGGATTTTATTGAGGATCTGAAGGTATTCATAGATAT AACTGCTAGAGTAATTCCTCTGGAGAATTCTATCATAGAACTAAAATGCAAACACAAAGAAGAACTCCATAAATTAGAAA GTAGAATTATGGGAATGAATCTTTTTGAGGAAAAACTCGGCATACTGGTCAATAAACTTGCAAATGACATAGGTACTGAA GATTTAACGTCCTGTATTGATGCAGTCCTGGCTACCTGTAGCGAAAATCTCGGGAGAAAGCGTGAGATTCTCGACATTGA AGCCAGAAAAATTGAAAATGGAGCCTCTCAGGAATATCAAAAGACTGAGAGTAAAGTCCTTGAGGTGCTCACGCCATTTC TAATCTCGGGGATATATGGAGCAGAAAAGAGGTTCGAGCTTTCCAGCAGTACAAACGAAGTGTCAGGTATAATGGAAGGT TCGATTTCAGGCCTTCAGTACTACTATAAACTCTGGTTTACGGAAGAGCCCCTGACAGTAAACAGGCTTATCGGCAACTT TAACCTGCCTGGCTGGACAAAAACGGGAATTCTGCGAAAAGAAGAAAAAATAAAGATGCAGGACCTTTCCGAGTTTTTAG TAACTTCCCTTGAGTACGATAGCGAAAAAAATATTCGCCTTGTTTTTGAAAACAAAAAATCAAACCGGAAGTTCAGAATA GAAGGTGGAGGGCTCAATTACTTCGTTTATGACGATAACAGGGAAATTACTGCAGATAAAGAGCTTGGAGATCATATCGA TATGATGTCTCTTGCACAGATTCCCGAAAAGGTCCAGGATTATCTGAGGGCGAATATCCGAAATTACGCTCTTTCAAAAA TTCTGCTTGATGAAGAGGATGCAATATCCACAAACCAGGTTTTCGATTGCCTCAAAGTGGTTGCAGAACAATACGGAGTG ATCGTTCATGAGTGTCTTGCAAAAGGGCATAATAAGGAAGAGATCACCATCAAAACAGAAGAAGCCGATGGAACAAGAAC TGAGAAATACATCTCAAAATCGGAGATATATACACAGCTTTCCGAGATAGGCAGTGAAGGTATTGAGATTGCAGAAATAC TCGGTGTGAACAGTAGATCTCAGATAAAGGAAAGCAAATACCTGATTGTCTAA
Upstream 100 bases:
>100_bases TGCATTACTTAAGAATGCCTGAAGATCATGGATAAAATGTTATATAGCTATAAGGCATAGAATATTTGGAGAGTTAGTTC AGAATTCCAGGGTGCTTTTT
Downstream 100 bases:
>100_bases TTTTTTTAATTTTATACTACAATATTTTTTAAATTATACTTTTTATATTTATGTGATGTATTTCTTTGCCATATTTCTTT ACAAATCATTTTTTAATCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MKYIYQDSTELPVQRDFIEDLKVFIDITARVIPLENSIIELKCKHKEELHKLESRIMGMNLFEEKLGILVNKLANDIGTE DLTSCIDAVLATCSENLGRKREILDIEARKIENGASQEYQKTESKVLEVLTPFLISGIYGAEKRFELSSSTNEVSGIMEG SISGLQYYYKLWFTEEPLTVNRLIGNFNLPGWTKTGILRKEEKIKMQDLSEFLVTSLEYDSEKNIRLVFENKKSNRKFRI EGGGLNYFVYDDNREITADKELGDHIDMMSLAQIPEKVQDYLRANIRNYALSKILLDEEDAISTNQVFDCLKVVAEQYGV IVHECLAKGHNKEEITIKTEEADGTRTEKYISKSEIYTQLSEIGSEGIEIAEILGVNSRSQIKESKYLIV
Sequences:
>Translated_390_residues MKYIYQDSTELPVQRDFIEDLKVFIDITARVIPLENSIIELKCKHKEELHKLESRIMGMNLFEEKLGILVNKLANDIGTE DLTSCIDAVLATCSENLGRKREILDIEARKIENGASQEYQKTESKVLEVLTPFLISGIYGAEKRFELSSSTNEVSGIMEG SISGLQYYYKLWFTEEPLTVNRLIGNFNLPGWTKTGILRKEEKIKMQDLSEFLVTSLEYDSEKNIRLVFENKKSNRKFRI EGGGLNYFVYDDNREITADKELGDHIDMMSLAQIPEKVQDYLRANIRNYALSKILLDEEDAISTNQVFDCLKVVAEQYGV IVHECLAKGHNKEEITIKTEEADGTRTEKYISKSEIYTQLSEIGSEGIEIAEILGVNSRSQIKESKYLIV >Mature_390_residues MKYIYQDSTELPVQRDFIEDLKVFIDITARVIPLENSIIELKCKHKEELHKLESRIMGMNLFEEKLGILVNKLANDIGTE DLTSCIDAVLATCSENLGRKREILDIEARKIENGASQEYQKTESKVLEVLTPFLISGIYGAEKRFELSSSTNEVSGIMEG SISGLQYYYKLWFTEEPLTVNRLIGNFNLPGWTKTGILRKEEKIKMQDLSEFLVTSLEYDSEKNIRLVFENKKSNRKFRI EGGGLNYFVYDDNREITADKELGDHIDMMSLAQIPEKVQDYLRANIRNYALSKILLDEEDAISTNQVFDCLKVVAEQYGV IVHECLAKGHNKEEITIKTEEADGTRTEKYISKSEIYTQLSEIGSEGIEIAEILGVNSRSQIKESKYLIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44619; Mature: 44619
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYIYQDSTELPVQRDFIEDLKVFIDITARVIPLENSIIELKCKHKEELHKLESRIMGMN CCCEECCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCHHHHHHHHHHHHCCH LFEEKLGILVNKLANDIGTEDLTSCIDAVLATCSENLGRKREILDIEARKIENGASQEYQ HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHH KTESKVLEVLTPFLISGIYGAEKRFELSSSTNEVSGIMEGSISGLQYYYKLWFTEEPLTV HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCHHHHEEHHHEEECCCCCCH NRLIGNFNLPGWTKTGILRKEEKIKMQDLSEFLVTSLEYDSEKNIRLVFENKKSNRKFRI HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEE EGGGLNYFVYDDNREITADKELGDHIDMMSLAQIPEKVQDYLRANIRNYALSKILLDEED ECCCEEEEEEECCCEEEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AISTNQVFDCLKVVAEQYGVIVHECLAKGHNKEEITIKTEEADGTRTEKYISKSEIYTQL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH SEIGSEGIEIAEILGVNSRSQIKESKYLIV HHHCCCCCHHHHHHCCCCHHHHHCCCCCCC >Mature Secondary Structure MKYIYQDSTELPVQRDFIEDLKVFIDITARVIPLENSIIELKCKHKEELHKLESRIMGMN CCCEECCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCHHHHHHHHHHHHCCH LFEEKLGILVNKLANDIGTEDLTSCIDAVLATCSENLGRKREILDIEARKIENGASQEYQ HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHH KTESKVLEVLTPFLISGIYGAEKRFELSSSTNEVSGIMEGSISGLQYYYKLWFTEEPLTV HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCHHHHEEHHHEEECCCCCCH NRLIGNFNLPGWTKTGILRKEEKIKMQDLSEFLVTSLEYDSEKNIRLVFENKKSNRKFRI HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEE EGGGLNYFVYDDNREITADKELGDHIDMMSLAQIPEKVQDYLRANIRNYALSKILLDEED ECCCEEEEEEECCCEEEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AISTNQVFDCLKVVAEQYGVIVHECLAKGHNKEEITIKTEEADGTRTEKYISKSEIYTQL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH SEIGSEGIEIAEILGVNSRSQIKESKYLIV HHHCCCCCHHHHHHCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA