| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227977
Identifier: 21227977
GI number: 21227977
Start: 2228317
End: 2230443
Strand: Direct
Name: 21227977
Synonym: MM_1875
Alternate gene names: NA
Gene position: 2228317-2230443 (Clockwise)
Preceding gene: 21227976
Following gene: 21227978
Centisome position: 54.4
GC content: 43.72
Gene sequence:
>2127_bases ATGATTGGAAGACGTGGATGTACTAATAAAAAAATCAAAACAAAAATTACCAGTTTTGTTTTTCTGACAGTACTGGTCTT TTCCCTGTGTTTCATCCCGGGGATGGCAGCTGAAACTGACAGTTCGGAGTTGATGGCTCAGGTCTTTGCCGCAGCCGAAA GTAATCTCGGGAATATCGGACCTGAAAACACACTTATAATAACAGATCTTGGCTCTCCTGCAGAGTCTTATGTTTTTCTG GATAATTTTTACTCGGAATTTAACGGAAGGAACCTGAAATATACCGATAATCTGCTTGTTGTCCAGAACGCAAGGAATGC CCCTCTCTGGTTTGCTTTCTTTGACAAAGCAAGCGGAAAATGTGCTTATATTGAGGTTACATACGGAGACGAGGAGAAGA TCAGCTATCAGGTAACGGAAAATATAAACTTTAATGGACTTTCGAAAAATAAGAAGTCCATAGAAGCTTGGAATCAAAAA GTGAATTCTGCTGTTTTTAAAGGGCATGAATTTGCCATTCTTACGATCTCTAATGCCTGGGCTACGGGAAATCTCGATTA TGAACTTATGCAGTGCCTGGAAATACACAACCACTTCTGTCCCGGAGTCTCAAGCGGTTTTGTGCTTGCAAACTGGATGG AAGAAAATTATCCGCTTAAAGAAGGGGTAAGTTATACGGTCTTTTCCTGCCCCAACTGGTGTAAAGAAGATGTTTTTGTC AAGCGCTGGGATGCCACCCCTGGAAAAGGAGGAATTTTTGTCTCTGCGCTGACGGATGAAGAGATCGAAACAATCGGGAA TTCTCCTGCCGGAATCTTTGTGGTTACGGATAAGAACGCCGGAACAATGAAAGCAGTAGCTCTCGGGTTTGACTTTGATG TCGTGAACGCGAAGTGCGGTGCAAAAAAGGATGATCCTGCATGGATTTCAAAATACCTGGCGGATCTCTGGCTTATGGAC AGAGGCAATTGGGATGAAGAAGGCCTTGTTACGGAAATCGCGGTTATCGACATTGATAAGGATACCCTTGGTGAAATGAA GCGGGCAGGTTCCAATCCCTATGAAGTCCTCGGGCTTCTCAACTCAAATGGAAATGTTAATCCCCCAGCTGAAGATAAGG AACTGATGGATCAGGTCTTTTCCGCAGCCGAAGCAGAGCTGGGGACTCTCGGACCTGAAAACACTTTTATAATGACTGAT ATCGGCTCTCCTGCAGAGTCCGATTTTTTTTTAAATAACTTTTATTCTGAGTTTTATGGAAAAGAGCTGAAATATACAAA GAATCTGCTTGTAGTCCAGAACGCAAGAAACGCCCCTCTCTGGTTTGCTTTCTTTGACAAAGCAAGCGGAAAATGTGCCT ACATTGAGGTTACATATGAAAACGAAGATAAAATCAGCTATCAGGCAACGGAAAATATAAACTTTAATGAGCTTTCCGCA AGCCAGGAGTCCATAGCAGCCTGGAGTGAAAAAGTAAACTCAAAGATTTTTAACGGGCGCGAATTTGCCATTCTTACAAT TTCCAATGCCTGGGCTACGGGAAATCTCGATTATGAACTTATGCAGTGCCTGGAGATACACAACCACTTCTGTCCCGGAG TTTCGAGCGGCTTTGTGCTTGCAAACTGGATGGAAGAAAATTATCCGCTTGAAGAGGGGGTAAGTTATACGGTTTTCTCC ACTCCTCACTGGTGTAAGGATGATGTTTTTGTCAAGCGCTGGGATGCTACTCCTGGAAAAGGAGGGGTTTTTGTCTCTGA ATTGACAGACGAGGAACTTGAGGCAATTGGAAGCGACCTTGCTGGAGTTTTCGTTGTCAGGGATAAGAATGCAGGAACTC TGAAGGCAGTTGTGCTCGGGTACAACTCTGATCTTGCGAGTGCAAATTGCGGGGCAAAAGAAAGTGATCCTGACTGGGTT TCAAAATATATGAAGGATCTCTGGCTTATGAACCCTGAAAATTGGGACGGTCTTGTTACAGAGATCGCTGTCATTGATAT CGATGATGCTGCCCTGAACGAAATGAAACAGGCAGATACCAATCCTTATGTAGTTATAGGGCTTCTCAACCTCGTAGAGG ATGTCAGCCCTCAGAATCTGGAATCCACTGAAGCAGTAACTGCATAA
Upstream 100 bases:
>100_bases TAAAATCCATATTTTGTTCTATTTATTAAGCTATATATTCTAAAAAATGCTACCCAATGCAGTATTAAATAAATGACTTA TGGGCAGAAGAGGTAAAAAT
Downstream 100 bases:
>100_bases GCAAAATACAAGCCTGGGATAGCGTGAAAAAGTTTGTGGAATCTTTAGTAGATTCCTCTTTACCTTATTTTTTATCTTTC CTGTGTTTTTCTTTCTCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MIGRRGCTNKKIKTKITSFVFLTVLVFSLCFIPGMAAETDSSELMAQVFAAAESNLGNIGPENTLIITDLGSPAESYVFL DNFYSEFNGRNLKYTDNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYGDEEKISYQVTENINFNGLSKNKKSIEAWNQK VNSAVFKGHEFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLKEGVSYTVFSCPNWCKEDVFV KRWDATPGKGGIFVSALTDEEIETIGNSPAGIFVVTDKNAGTMKAVALGFDFDVVNAKCGAKKDDPAWISKYLADLWLMD RGNWDEEGLVTEIAVIDIDKDTLGEMKRAGSNPYEVLGLLNSNGNVNPPAEDKELMDQVFSAAEAELGTLGPENTFIMTD IGSPAESDFFLNNFYSEFYGKELKYTKNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYENEDKISYQATENINFNELSA SQESIAAWSEKVNSKIFNGREFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLEEGVSYTVFS TPHWCKDDVFVKRWDATPGKGGVFVSELTDEELEAIGSDLAGVFVVRDKNAGTLKAVVLGYNSDLASANCGAKESDPDWV SKYMKDLWLMNPENWDGLVTEIAVIDIDDAALNEMKQADTNPYVVIGLLNLVEDVSPQNLESTEAVTA
Sequences:
>Translated_708_residues MIGRRGCTNKKIKTKITSFVFLTVLVFSLCFIPGMAAETDSSELMAQVFAAAESNLGNIGPENTLIITDLGSPAESYVFL DNFYSEFNGRNLKYTDNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYGDEEKISYQVTENINFNGLSKNKKSIEAWNQK VNSAVFKGHEFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLKEGVSYTVFSCPNWCKEDVFV KRWDATPGKGGIFVSALTDEEIETIGNSPAGIFVVTDKNAGTMKAVALGFDFDVVNAKCGAKKDDPAWISKYLADLWLMD RGNWDEEGLVTEIAVIDIDKDTLGEMKRAGSNPYEVLGLLNSNGNVNPPAEDKELMDQVFSAAEAELGTLGPENTFIMTD IGSPAESDFFLNNFYSEFYGKELKYTKNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYENEDKISYQATENINFNELSA SQESIAAWSEKVNSKIFNGREFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLEEGVSYTVFS TPHWCKDDVFVKRWDATPGKGGVFVSELTDEELEAIGSDLAGVFVVRDKNAGTLKAVVLGYNSDLASANCGAKESDPDWV SKYMKDLWLMNPENWDGLVTEIAVIDIDDAALNEMKQADTNPYVVIGLLNLVEDVSPQNLESTEAVTA >Mature_708_residues MIGRRGCTNKKIKTKITSFVFLTVLVFSLCFIPGMAAETDSSELMAQVFAAAESNLGNIGPENTLIITDLGSPAESYVFL DNFYSEFNGRNLKYTDNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYGDEEKISYQVTENINFNGLSKNKKSIEAWNQK VNSAVFKGHEFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLKEGVSYTVFSCPNWCKEDVFV KRWDATPGKGGIFVSALTDEEIETIGNSPAGIFVVTDKNAGTMKAVALGFDFDVVNAKCGAKKDDPAWISKYLADLWLMD RGNWDEEGLVTEIAVIDIDKDTLGEMKRAGSNPYEVLGLLNSNGNVNPPAEDKELMDQVFSAAEAELGTLGPENTFIMTD IGSPAESDFFLNNFYSEFYGKELKYTKNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYENEDKISYQATENINFNELSA SQESIAAWSEKVNSKIFNGREFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLEEGVSYTVFS TPHWCKDDVFVKRWDATPGKGGVFVSELTDEELEAIGSDLAGVFVVRDKNAGTLKAVVLGYNSDLASANCGAKESDPDWV SKYMKDLWLMNPENWDGLVTEIAVIDIDDAALNEMKQADTNPYVVIGLLNLVEDVSPQNLESTEAVTA
Specific function: Unknown
COG id: COG5643
COG function: function code R; Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78466; Mature: 78466
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGRRGCTNKKIKTKITSFVFLTVLVFSLCFIPGMAAETDSSELMAQVFAAAESNLGNIG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC PENTLIITDLGSPAESYVFLDNFYSEFNGRNLKYTDNLLVVQNARNAPLWFAFFDKASGK CCCEEEEEECCCCCHHEEEHHHHHHHHCCCCEEEECCEEEEECCCCCCEEEEEEECCCCC CAYIEVTYGDEEKISYQVTENINFNGLSKNKKSIEAWNQKVNSAVFKGHEFAILTISNAW EEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCE ATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLKEGVSYTVFSCPNWCKEDVFV ECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECHHCCCCHHHCCCEEEECCCCCCCCCCEE KRWDATPGKGGIFVSALTDEEIETIGNSPAGIFVVTDKNAGTMKAVALGFDFDVVNAKCG EEECCCCCCCCEEEEEECCHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCEEEEECCCC AKKDDPAWISKYLADLWLMDRGNWDEEGLVTEIAVIDIDKDTLGEMKRAGSNPYEVLGLL CCCCCHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCEEEEEEE NSNGNVNPPAEDKELMDQVFSAAEAELGTLGPENTFIMTDIGSPAESDFFLNNFYSEFYG CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCC KELKYTKNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYENEDKISYQATENINFNELSA CCHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCC SQESIAAWSEKVNSKIFNGREFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVL CHHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCHHHHHHHHHHHHCCCCCCCCCEE ANWMEENYPLEEGVSYTVFSTPHWCKDDVFVKRWDATPGKGGVFVSELTDEELEAIGSDL EECHHCCCCHHHCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHCCCC AGVFVVRDKNAGTLKAVVLGYNSDLASANCGAKESDPDWVSKYMKDLWLMNPENWDGLVT EEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCEEE EIAVIDIDDAALNEMKQADTNPYVVIGLLNLVEDVSPQNLESTEAVTA EEEEEECCHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MIGRRGCTNKKIKTKITSFVFLTVLVFSLCFIPGMAAETDSSELMAQVFAAAESNLGNIG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC PENTLIITDLGSPAESYVFLDNFYSEFNGRNLKYTDNLLVVQNARNAPLWFAFFDKASGK CCCEEEEEECCCCCHHEEEHHHHHHHHCCCCEEEECCEEEEECCCCCCEEEEEEECCCCC CAYIEVTYGDEEKISYQVTENINFNGLSKNKKSIEAWNQKVNSAVFKGHEFAILTISNAW EEEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCE ATGNLDYELMQCLEIHNHFCPGVSSGFVLANWMEENYPLKEGVSYTVFSCPNWCKEDVFV ECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECHHCCCCHHHCCCEEEECCCCCCCCCCEE KRWDATPGKGGIFVSALTDEEIETIGNSPAGIFVVTDKNAGTMKAVALGFDFDVVNAKCG EEECCCCCCCCEEEEEECCHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCEEEEECCCC AKKDDPAWISKYLADLWLMDRGNWDEEGLVTEIAVIDIDKDTLGEMKRAGSNPYEVLGLL CCCCCHHHHHHHHHHHEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCEEEEEEE NSNGNVNPPAEDKELMDQVFSAAEAELGTLGPENTFIMTDIGSPAESDFFLNNFYSEFYG CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCC KELKYTKNLLVVQNARNAPLWFAFFDKASGKCAYIEVTYENEDKISYQATENINFNELSA CCHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCC SQESIAAWSEKVNSKIFNGREFAILTISNAWATGNLDYELMQCLEIHNHFCPGVSSGFVL CHHHHHHHHHHHHHHHCCCCEEEEEEEECCEECCCCCHHHHHHHHHHHHCCCCCCCCCEE ANWMEENYPLEEGVSYTVFSTPHWCKDDVFVKRWDATPGKGGVFVSELTDEELEAIGSDL EECHHCCCCHHHCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEECCCHHHHHHHCCCC AGVFVVRDKNAGTLKAVVLGYNSDLASANCGAKESDPDWVSKYMKDLWLMNPENWDGLVT EEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCEEE EIAVIDIDDAALNEMKQADTNPYVVIGLLNLVEDVSPQNLESTEAVTA EEEEEECCHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA