| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21227919
Identifier: 21227919
GI number: 21227919
Start: 2168258
End: 2168977
Strand: Reverse
Name: 21227919
Synonym: MM_1817
Alternate gene names: NA
Gene position: 2168977-2168258 (Counterclockwise)
Preceding gene: 21227920
Following gene: 21227913
Centisome position: 52.95
GC content: 47.22
Gene sequence:
>720_bases ATGAGCAGACAGATTTTTTACATGCCTTTCAGCCTGAGATTCCTTTTCTTATTAATAATCATAACAATCTTCGGACTGGG TTCTCTGTTTCTGGGAGTCATAGTTTCTGCTTTCATGAAAATAGGATTTTCCGCAGAGGACGCCCTCTTAATTCTCTTCC TGTCTCTCCTTGGAAGCGGAATCAATATCCCGCTGACAACTCTGAAATCCGATATTCCGGTCGTCAAGGATAATTATATA AAGTTCTTCGGGATTTCCTACAGGATTCCTACCCGCCAGATTGTCAGGAATGAAACCTTACTTGCTATCAATGTGGGAGG AGCGGTTATCCCTGTCCTGATTTCCGCTTACCTTCTTACGCAATTCCCTTCTTCTCTCCTTCTTGCAGGAGCCGGTGTGG CGATTGTTGCAATTGTGACTCATTCCGTAGCAAGACCGATCAAAGGAGTGGGTATTGCAACCCCTGCTCTGATCCCACCC CTTACATCTGTCCTTTCCGCAGTCCTGCTCACCTCGATAGTCCATATTCCAGGCTGCCCTGCAGAACCGTGCCGTGTTAT TATTGCCTACACCGGAGGAGTACTCGGGACCCTCATAGGAGCTGACCTGCTTAACCTGGGAAAAATTAAGAACCTTGGAG CTCCGGTTGCAAGCATAGGAGGAGCAGGCACCTTTGATGGGATATTTTTAAGCGGGTTTATCGCCCTTCTCCTGATCTGA
Upstream 100 bases:
>100_bases TGGTTTTTCTCACAGTTATGAAAAGCCCGGGATATTCATTAATAAAGAGAAAGCACATACCTTTTAATATGCAAAAAACC GGAAAACAGAGAGTAGTCCC
Downstream 100 bases:
>100_bases AAAAATCCTCCTGACCTGAGAAAATCCTCCTGACCTGAGAAAATCCTCCTGACCTGAGAAAATCCTCCTGACCTGAGAAA ATCCTCCTGACCTGAGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MSRQIFYMPFSLRFLFLLIIITIFGLGSLFLGVIVSAFMKIGFSAEDALLILFLSLLGSGINIPLTTLKSDIPVVKDNYI KFFGISYRIPTRQIVRNETLLAINVGGAVIPVLISAYLLTQFPSSLLLAGAGVAIVAIVTHSVARPIKGVGIATPALIPP LTSVLSAVLLTSIVHIPGCPAEPCRVIIAYTGGVLGTLIGADLLNLGKIKNLGAPVASIGGAGTFDGIFLSGFIALLLI
Sequences:
>Translated_239_residues MSRQIFYMPFSLRFLFLLIIITIFGLGSLFLGVIVSAFMKIGFSAEDALLILFLSLLGSGINIPLTTLKSDIPVVKDNYI KFFGISYRIPTRQIVRNETLLAINVGGAVIPVLISAYLLTQFPSSLLLAGAGVAIVAIVTHSVARPIKGVGIATPALIPP LTSVLSAVLLTSIVHIPGCPAEPCRVIIAYTGGVLGTLIGADLLNLGKIKNLGAPVASIGGAGTFDGIFLSGFIALLLI >Mature_238_residues SRQIFYMPFSLRFLFLLIIITIFGLGSLFLGVIVSAFMKIGFSAEDALLILFLSLLGSGINIPLTTLKSDIPVVKDNYIK FFGISYRIPTRQIVRNETLLAINVGGAVIPVLISAYLLTQFPSSLLLAGAGVAIVAIVTHSVARPIKGVGIATPALIPPL TSVLSAVLLTSIVHIPGCPAEPCRVIIAYTGGVLGTLIGADLLNLGKIKNLGAPVASIGGAGTFDGIFLSGFIALLLI
Specific function: Unknown
COG id: COG4089
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25017; Mature: 24885
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRQIFYMPFSLRFLFLLIIITIFGLGSLFLGVIVSAFMKIGFSAEDALLILFLSLLGSG CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC INIPLTTLKSDIPVVKDNYIKFFGISYRIPTRQIVRNETLLAINVGGAVIPVLISAYLLT CCCCHHHHHCCCCCHHCCCEEEEEEEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHHHH QFPSSLLLAGAGVAIVAIVTHSVARPIKGVGIATPALIPPLTSVLSAVLLTSIVHIPGCP HCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC AEPCRVIIAYTGGVLGTLIGADLLNLGKIKNLGAPVASIGGAGTFDGIFLSGFIALLLI CHHHEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHC >Mature Secondary Structure SRQIFYMPFSLRFLFLLIIITIFGLGSLFLGVIVSAFMKIGFSAEDALLILFLSLLGSG CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC INIPLTTLKSDIPVVKDNYIKFFGISYRIPTRQIVRNETLLAINVGGAVIPVLISAYLLT CCCCHHHHHCCCCCHHCCCEEEEEEEEECCHHHHHCCCCEEEEECCCHHHHHHHHHHHHH QFPSSLLLAGAGVAIVAIVTHSVARPIKGVGIATPALIPPLTSVLSAVLLTSIVHIPGCP HCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC AEPCRVIIAYTGGVLGTLIGADLLNLGKIKNLGAPVASIGGAGTFDGIFLSGFIALLLI CHHHEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA