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The map label for this gene is priA [H]

Identifier: 21227913

GI number: 21227913

Start: 2159811

End: 2161055

Strand: Reverse

Name: priA [H]

Synonym: MM_1811

Alternate gene names: 21227913

Gene position: 2161055-2159811 (Counterclockwise)

Preceding gene: 21227919

Following gene: 21227912

Centisome position: 52.76

GC content: 44.1

Gene sequence:

>1245_bases
ATGGACAGCAGAACAACCCGTTATTTAAAATCCTGTTTTCAAAAACACTATAAAACCGCTGAGATAGGCCTCCCTGACCA
CCTGCCTAACAGAGAGTGGGCTTTCATCTTTTATGACGATATGCCGGAAAAAATGATGCACAGGCACAAGTCTTTCGGCT
CGCCGGGAGAAGCTCTGGATTACCTTTACGGCATGGCTCCTGCACATGTTTACAACTCTACTGCTTATTACGAATACCCT
GACGCACGAAAAATGAATGAGAAAAACTGGCTTGGGGCAGAGCTAATTTTTGACCTTGACGCGGACCACCTGCCTAATGC
CCCGAGAAATTATGCAGACATGCTTGAGCTTGTAAAGAAAGAGACCCTCAAGCTCATGGATTTTCTTCTGGATGATTTTG
GATTCTCAGAACAGGATATCGAACTCGTATTTTCCGGAGGAAGAGGATACCATTTCCATATTACCAGCCCTAAAGTCCTG
ACACTCGGGAGTTCCGAGAGGAGGGAAATCGTGAACTATCTCAGCGGGAGGGATATTGATTTTAAGTATTTTTTCAGGGA
AGTCTCAATGGACGGGGATTTCGGTACCGGTTCGAAGTCGTTCAAAGGGATCAAAAACCTTCCAGTAAAGTGCACGCTTG
TGGGATACGACAGCGGGTGGGGAAAGAGAGTTGCACTTTACCTTACTGACTACATGAAAGCAGAGTGCGGAAAAAAATAC
AAAAAAGATATGTTTCCCGAGCTCCGAAGGCATGAGAAAGTAGGGGATACCACAATCAAAAAACTGATTAATATTACTAA
CAGTGAAAACGGCTTAAAAGATATTCTGGAGAGAGGAAGGCTGGATTTCGGCGTAAGAAATTTTAAGGAGATTGCCGCAT
ATTTCATGCAGGAATCTATGGAAAATTTCCTTAACCGTTTTGGAGCCAGTGTTGATGAACCCGTGACTGCCGACATCAAA
AGACTTATCCGTGTCCCCGGGTCCCTTCACGGAGGCTCAGGGATGCTGGTCAAAAAACTTGCTTTATGCGAACTGGAAAA
GTTTAACCCGCTGAATGACGCAGTTGTTTTTGGTGAAAGACCGGTAAAAATAACCGTTTCAAAGCCTTTCTCAGTACAGT
TAAAAGGCAAGGATTTAAGAATAGAGGAAGGCATACAGGAAGTTCCGGAATATGCAGCCGTATATCTGATTTGTAGAGGT
GTTGCTGAGTATGGATATAGAAGGAATCAGCCAGACGCTGTATAA

Upstream 100 bases:

>100_bases
AACTATTTTAAAAAAGACTCATATAAACAAAAGTAAAATATGAGTTATTCTATCATAAGAGACCCCTAACCAAGATCCAA
AAACCCTGAACCCCGAAACC

Downstream 100 bases:

>100_bases
AGAAAAAAACCAGACCTTAAAAACAATTCCGGCTGATTTTTATCGGGAAGCCGAAAAATATATCCGGGAACTCGAGAAAG
AAATAAGCAAAATAAACAAT

Product: DNA primase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MDSRTTRYLKSCFQKHYKTAEIGLPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYP
DARKMNEKNWLGAELIFDLDADHLPNAPRNYADMLELVKKETLKLMDFLLDDFGFSEQDIELVFSGGRGYHFHITSPKVL
TLGSSERREIVNYLSGRDIDFKYFFREVSMDGDFGTGSKSFKGIKNLPVKCTLVGYDSGWGKRVALYLTDYMKAECGKKY
KKDMFPELRRHEKVGDTTIKKLINITNSENGLKDILERGRLDFGVRNFKEIAAYFMQESMENFLNRFGASVDEPVTADIK
RLIRVPGSLHGGSGMLVKKLALCELEKFNPLNDAVVFGERPVKITVSKPFSVQLKGKDLRIEEGIQEVPEYAAVYLICRG
VAEYGYRRNQPDAV

Sequences:

>Translated_414_residues
MDSRTTRYLKSCFQKHYKTAEIGLPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYP
DARKMNEKNWLGAELIFDLDADHLPNAPRNYADMLELVKKETLKLMDFLLDDFGFSEQDIELVFSGGRGYHFHITSPKVL
TLGSSERREIVNYLSGRDIDFKYFFREVSMDGDFGTGSKSFKGIKNLPVKCTLVGYDSGWGKRVALYLTDYMKAECGKKY
KKDMFPELRRHEKVGDTTIKKLINITNSENGLKDILERGRLDFGVRNFKEIAAYFMQESMENFLNRFGASVDEPVTADIK
RLIRVPGSLHGGSGMLVKKLALCELEKFNPLNDAVVFGERPVKITVSKPFSVQLKGKDLRIEEGIQEVPEYAAVYLICRG
VAEYGYRRNQPDAV
>Mature_414_residues
MDSRTTRYLKSCFQKHYKTAEIGLPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYP
DARKMNEKNWLGAELIFDLDADHLPNAPRNYADMLELVKKETLKLMDFLLDDFGFSEQDIELVFSGGRGYHFHITSPKVL
TLGSSERREIVNYLSGRDIDFKYFFREVSMDGDFGTGSKSFKGIKNLPVKCTLVGYDSGWGKRVALYLTDYMKAECGKKY
KKDMFPELRRHEKVGDTTIKKLINITNSENGLKDILERGRLDFGVRNFKEIAAYFMQESMENFLNRFGASVDEPVTADIK
RLIRVPGSLHGGSGMLVKKLALCELEKFNPLNDAVVFGERPVKITVSKPFSVQLKGKDLRIEEGIQEVPEYAAVYLICRG
VAEYGYRRNQPDAV

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]

COG id: COG1467

COG function: function code L; Eukaryotic-type DNA primase, catalytic (small) subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic-type primase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002755
- InterPro:   IPR014052 [H]

Pfam domain/function: PF01896 DNA_primase_S [H]

EC number: 2.7.7.-

Molecular weight: Translated: 47503; Mature: 47503

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRTTRYLKSCFQKHYKTAEIGLPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALD
CCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHH
YLYGMAPAHVYNSTAYYEYPDARKMNEKNWLGAELIFDLDADHLPNAPRNYADMLELVKK
HHHCCCHHHHHCCCCEEECCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
ETLKLMDFLLDDFGFSEQDIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYLSGRDID
HHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCEEECCCHHHHHHHHHHCCCCCC
FKYFFREVSMDGDFGTGSKSFKGIKNLPVKCTLVGYDSGWGKRVALYLTDYMKAECGKKY
HHHHHHHHCCCCCCCCCCHHCCHHHCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHH
KKDMFPELRRHEKVGDTTIKKLINITNSENGLKDILERGRLDFGVRNFKEIAAYFMQESM
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ENFLNRFGASVDEPVTADIKRLIRVPGSLHGGSGMLVKKLALCELEKFNPLNDAVVFGER
HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
PVKITVSKPFSVQLKGKDLRIEEGIQEVPEYAAVYLICRGVAEYGYRRNQPDAV
CEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDSRTTRYLKSCFQKHYKTAEIGLPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALD
CCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHH
YLYGMAPAHVYNSTAYYEYPDARKMNEKNWLGAELIFDLDADHLPNAPRNYADMLELVKK
HHHCCCHHHHHCCCCEEECCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
ETLKLMDFLLDDFGFSEQDIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYLSGRDID
HHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCEEECCCHHHHHHHHHHCCCCCC
FKYFFREVSMDGDFGTGSKSFKGIKNLPVKCTLVGYDSGWGKRVALYLTDYMKAECGKKY
HHHHHHHHCCCCCCCCCCHHCCHHHCCCEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHH
KKDMFPELRRHEKVGDTTIKKLINITNSENGLKDILERGRLDFGVRNFKEIAAYFMQESM
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ENFLNRFGASVDEPVTADIKRLIRVPGSLHGGSGMLVKKLALCELEKFNPLNDAVVFGER
HHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
PVKITVSKPFSVQLKGKDLRIEEGIQEVPEYAAVYLICRGVAEYGYRRNQPDAV
CEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA