| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227768
Identifier: 21227768
GI number: 21227768
Start: 1992485
End: 1995289
Strand: Direct
Name: 21227768
Synonym: MM_1666
Alternate gene names: NA
Gene position: 1992485-1995289 (Clockwise)
Preceding gene: 21227764
Following gene: 21227769
Centisome position: 48.64
GC content: 30.62
Gene sequence:
>2805_bases ATGATAGAATATCCAAGAGGTTCAGAATGGGCAAAATGGGATTTACACATCCATACACCTGAATCAATTATTAATGGTTA CGGAAATTCAGCAGATGTTTGGGAAGAATTCCTAACAGATCTCGAATCATTACCAGAAGATTTCAAAGTTCTAGGGATCA ATGATTATCTATTTCTTGATGGTTATGAAAGGATTAAACATGAAAAAGAAATTAATGGTCGATTACCCAATATAAAACTA ATATTACCTGTCGTTGAGTTTAGAATCCAAAAATTTGCTGGAGTTGAATTTCGTAACACCAAAAGAATTAACATGCACGT TATATTTTCAGATGAACTTAACGTAGAGACAATTAAAAGTCAGTTTCTAAACGCTCTAGAGCAATCTTACACATTAACTC CCGGCCTTGACCCTGAATTATGGAATGGGAGTATTACTAGAAAGAGTTTAGAAGATCTCGGAAGCAAAATAAAAGCCACT GTTCCTAAAGATCAATTATCCAGTTATGGATCAGACTTAATTGAAGGATTTAATAACCTTAATCTTAACGAGAAAGAAAT ATTAAAAGTATTGAAAAAGCGGCATTATTTTAAAGATAAATATTTAATAGCAATTGGCAAAACAGAATGGGATCTACTCC AATGGTCGGAAGGTTCAATCTCAGAAAAAAAGAATACCATCAATGATGCTCATCTAGTATTTACATCTGCAGAATCTGTT GAACATTATATTAAAGCAAAAGAAAAACTAAAGGAACAAGGAGTGAATTATTTGCTCCTTGACTGTAGTGACGCTCATAC TTTTTCTCATAATACTCGAAAAAAGGATAGGATCGGGAACTGTTTCAATTGGATTAAAGCTAATCCTACGTTTGAAGGAT TACGGCAGGTAGTTTTTGAAAAGTTTGAACGTATTTGGATTGACGAAGAGAACCCAAAAAAGAGGTATGAAAAGCCTTTT TTTTCGGAGATCAGGATTAAAACTACTAATGTTTTCATTAATAGTAGTGTTAAATTTAGTGGAACTGTACTACCGCTAAA CTCTAATCTTGTTACAATTGTTGGTGGTAGAGGTACAGGCAAAAGTGTGCTTCTAGATGCTATTGCCAAAACTTTCAACA AAACAAATATGAACGAACGCTCTAAAGATATTTTAATTAACAAAGATAATTTCATAGTTACATATCAGAAACCAGATGGA GAGAATATTGAATACCATATTGATGATAAAAATAACCTAGACTATTTACATATTTACCAAGGAGAGGTTAAGGAAATAGT TGATCCAAAGAATCCTGCGATATTGGATAACGAGATAAAAAAACTTCTCAATTTGCCCATAGAAGAGGATCCATTAAATC TAACAGAACCTGAGGTTGAGCGATTAATCAACGAAATTTTTGTTATAAAAGATTGGTTGAACTATGTAGACAATGAGGGT AATCTGCTTAACTCGATTGAATTTAATCAAAGAAAGAAAAAAGAGAAGGTAGATTTAATTGAAACTATTACTACTAATGA AAATCGTCAATTGATTAATCAATACATTGAGAATCTCAATGAAATTAACAACATTACAGGAAACGTTAAAAAAGTACAAC AGATTTTATCTGAAATGGAATATTTCCAGAATAGAATGGATATTGAAATTGAAAAGTTAAATGAAGATATTGATATCCAA GAAGATAAAATTCCATTTTTGAATATTTCTATTCAAATTTATCGTTTTAGGAATTATATACAAGAGAAAGATAAAAAAGT TGAAGAGCTATATCAAAAAAATTTAAAAATTGATACTAAATTTAAAAATGCCGGAATTAAAATAGATGTCACATCATTGT TAGAACAAATAGAAATTTATCAAAGTGAAATTAATAATTATAAAAATAAAATTAATGAGATACATTTTAAAATTGAAGAA ATTAATAACAAATTTTCAAAACTAAGCAAGCTAGCTGATTTAATCCTACAATCTCATCATAAACGCATTACATATATTGA TGATAGATGGACGCAGTTAAAAAATGGAAAAAAATATTGGAATTCTGAACAAAAAAACATAACTGAGGAGCTGTTGAATG ATATTCAGGTAAAAGCTCTCGAAATATTTGACTCAAAAGAGTTTTTCGCTCAAATATACGGACATCATTGCCTAAATCTT CGCAAGTTTCGAGGAACACAGTCTCAAACACAGAATGAAAGACTTGAGGAGACTTTCCAAATTAGAGAGCAAAACGATCT ATTAAAATTATTGAAAGGTGAAAAAGTTGTCAATGTGGATAATGTTCTTCTAAATTTGGCAGAGTTATTAGATTCTGATT TATTTAGCAAAGACGGTAAAAGAGAATTCTTAAGGATACTTCTTTTAGAGAAAAATAGAAGGAAATATTGGAATGTACAA ACAAACTCTACTTATAAAGGAAAAGAGATAAGCCATCTTTCAGTGGGGATGAGAGGCACTTTCTATGTATGTTTAAAGCT TGCTACAGATCCTTTTATAAAACCTTTTGTTTTCGATCAACCAGAAGATGATCTGGATAATGATTTTATCATGAATTCTT TAGTGCCAATTTTCAAAAAAATTAAAAAATATAGACAAGTGATTATTGTAACACATAACGCCAATTTAGTTGTGAACGCT GACGCTGAACAAGTAATTGTGGCAAAAAATGAAGATGAAGTTTTAAGTTATGAATCGGGAGCAATTGAAAATCCAGCCAT AAAAGAGCAGATATGTAAAATTCTTGAGGGTGGCAAGCCTGCATTTACGATGAGAGAGAAAAAATACGGATTTGTGAACA TATAA
Upstream 100 bases:
>100_bases GTACTCCAAAATTGATAATGAAAGGTTTGGAGAAAAGTTCGGAGAATTCTCGAATACAGAATTAGATTGATTATGACTGC GTGAGAATGGTGAGAGACTT
Downstream 100 bases:
>100_bases TGACTGAAAGCGAAAGAATGTTACCTTCTCATTGGATCTGTTCCTAGCTGGGTGAGGTTTGCCAAACTACCAGTGGTGGT ACTCCAAGTAGAAAGAACCC
Product: DNA repair ATPase
Products: NA
Alternate protein names: ABC Transporter; SMC Domain-Containing Protein; DNA Repair ATPase; ATPase; SMC Domain Protein; Phosphotransferase Domain-Containing Protein; PHP-Like; Phosphoesterase PHP Domain Protein; PHP N-Terminal Domain Protein
Number of amino acids: Translated: 934; Mature: 934
Protein sequence:
>934_residues MIEYPRGSEWAKWDLHIHTPESIINGYGNSADVWEEFLTDLESLPEDFKVLGINDYLFLDGYERIKHEKEINGRLPNIKL ILPVVEFRIQKFAGVEFRNTKRINMHVIFSDELNVETIKSQFLNALEQSYTLTPGLDPELWNGSITRKSLEDLGSKIKAT VPKDQLSSYGSDLIEGFNNLNLNEKEILKVLKKRHYFKDKYLIAIGKTEWDLLQWSEGSISEKKNTINDAHLVFTSAESV EHYIKAKEKLKEQGVNYLLLDCSDAHTFSHNTRKKDRIGNCFNWIKANPTFEGLRQVVFEKFERIWIDEENPKKRYEKPF FSEIRIKTTNVFINSSVKFSGTVLPLNSNLVTIVGGRGTGKSVLLDAIAKTFNKTNMNERSKDILINKDNFIVTYQKPDG ENIEYHIDDKNNLDYLHIYQGEVKEIVDPKNPAILDNEIKKLLNLPIEEDPLNLTEPEVERLINEIFVIKDWLNYVDNEG NLLNSIEFNQRKKKEKVDLIETITTNENRQLINQYIENLNEINNITGNVKKVQQILSEMEYFQNRMDIEIEKLNEDIDIQ EDKIPFLNISIQIYRFRNYIQEKDKKVEELYQKNLKIDTKFKNAGIKIDVTSLLEQIEIYQSEINNYKNKINEIHFKIEE INNKFSKLSKLADLILQSHHKRITYIDDRWTQLKNGKKYWNSEQKNITEELLNDIQVKALEIFDSKEFFAQIYGHHCLNL RKFRGTQSQTQNERLEETFQIREQNDLLKLLKGEKVVNVDNVLLNLAELLDSDLFSKDGKREFLRILLLEKNRRKYWNVQ TNSTYKGKEISHLSVGMRGTFYVCLKLATDPFIKPFVFDQPEDDLDNDFIMNSLVPIFKKIKKYRQVIIVTHNANLVVNA DAEQVIVAKNEDEVLSYESGAIENPAIKEQICKILEGGKPAFTMREKKYGFVNI
Sequences:
>Translated_934_residues MIEYPRGSEWAKWDLHIHTPESIINGYGNSADVWEEFLTDLESLPEDFKVLGINDYLFLDGYERIKHEKEINGRLPNIKL ILPVVEFRIQKFAGVEFRNTKRINMHVIFSDELNVETIKSQFLNALEQSYTLTPGLDPELWNGSITRKSLEDLGSKIKAT VPKDQLSSYGSDLIEGFNNLNLNEKEILKVLKKRHYFKDKYLIAIGKTEWDLLQWSEGSISEKKNTINDAHLVFTSAESV EHYIKAKEKLKEQGVNYLLLDCSDAHTFSHNTRKKDRIGNCFNWIKANPTFEGLRQVVFEKFERIWIDEENPKKRYEKPF FSEIRIKTTNVFINSSVKFSGTVLPLNSNLVTIVGGRGTGKSVLLDAIAKTFNKTNMNERSKDILINKDNFIVTYQKPDG ENIEYHIDDKNNLDYLHIYQGEVKEIVDPKNPAILDNEIKKLLNLPIEEDPLNLTEPEVERLINEIFVIKDWLNYVDNEG NLLNSIEFNQRKKKEKVDLIETITTNENRQLINQYIENLNEINNITGNVKKVQQILSEMEYFQNRMDIEIEKLNEDIDIQ EDKIPFLNISIQIYRFRNYIQEKDKKVEELYQKNLKIDTKFKNAGIKIDVTSLLEQIEIYQSEINNYKNKINEIHFKIEE INNKFSKLSKLADLILQSHHKRITYIDDRWTQLKNGKKYWNSEQKNITEELLNDIQVKALEIFDSKEFFAQIYGHHCLNL RKFRGTQSQTQNERLEETFQIREQNDLLKLLKGEKVVNVDNVLLNLAELLDSDLFSKDGKREFLRILLLEKNRRKYWNVQ TNSTYKGKEISHLSVGMRGTFYVCLKLATDPFIKPFVFDQPEDDLDNDFIMNSLVPIFKKIKKYRQVIIVTHNANLVVNA DAEQVIVAKNEDEVLSYESGAIENPAIKEQICKILEGGKPAFTMREKKYGFVNI >Mature_934_residues MIEYPRGSEWAKWDLHIHTPESIINGYGNSADVWEEFLTDLESLPEDFKVLGINDYLFLDGYERIKHEKEINGRLPNIKL ILPVVEFRIQKFAGVEFRNTKRINMHVIFSDELNVETIKSQFLNALEQSYTLTPGLDPELWNGSITRKSLEDLGSKIKAT VPKDQLSSYGSDLIEGFNNLNLNEKEILKVLKKRHYFKDKYLIAIGKTEWDLLQWSEGSISEKKNTINDAHLVFTSAESV EHYIKAKEKLKEQGVNYLLLDCSDAHTFSHNTRKKDRIGNCFNWIKANPTFEGLRQVVFEKFERIWIDEENPKKRYEKPF FSEIRIKTTNVFINSSVKFSGTVLPLNSNLVTIVGGRGTGKSVLLDAIAKTFNKTNMNERSKDILINKDNFIVTYQKPDG ENIEYHIDDKNNLDYLHIYQGEVKEIVDPKNPAILDNEIKKLLNLPIEEDPLNLTEPEVERLINEIFVIKDWLNYVDNEG NLLNSIEFNQRKKKEKVDLIETITTNENRQLINQYIENLNEINNITGNVKKVQQILSEMEYFQNRMDIEIEKLNEDIDIQ EDKIPFLNISIQIYRFRNYIQEKDKKVEELYQKNLKIDTKFKNAGIKIDVTSLLEQIEIYQSEINNYKNKINEIHFKIEE INNKFSKLSKLADLILQSHHKRITYIDDRWTQLKNGKKYWNSEQKNITEELLNDIQVKALEIFDSKEFFAQIYGHHCLNL RKFRGTQSQTQNERLEETFQIREQNDLLKLLKGEKVVNVDNVLLNLAELLDSDLFSKDGKREFLRILLLEKNRRKYWNVQ TNSTYKGKEISHLSVGMRGTFYVCLKLATDPFIKPFVFDQPEDDLDNDFIMNSLVPIFKKIKKYRQVIIVTHNANLVVNA DAEQVIVAKNEDEVLSYESGAIENPAIKEQICKILEGGKPAFTMREKKYGFVNI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109279; Mature: 109279
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEYPRGSEWAKWDLHIHTPESIINGYGNSADVWEEFLTDLESLPEDFKVLGINDYLFLD CCCCCCCCCCEEEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEC GYERIKHEKEINGRLPNIKLILPVVEFRIQKFAGVEFRNTKRINMHVIFSDELNVETIKS CHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCHHHHHH QFLNALEQSYTLTPGLDPELWNGSITRKSLEDLGSKIKATVPKDQLSSYGSDLIEGFNNL HHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHCCC NLNEKEILKVLKKRHYFKDKYLIAIGKTEWDLLQWSEGSISEKKNTINDAHLVFTSAESV CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCCHHHHCCCCCEEEEEECHHHH EHYIKAKEKLKEQGVNYLLLDCSDAHTFSHNTRKKDRIGNCFNWIKANPTFEGLRQVVFE HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH KFERIWIDEENPKKRYEKPFFSEIRIKTTNVFINSSVKFSGTVLPLNSNLVTIVGGRGTG HHHHHCCCCCCCHHHHCCCCHHHEEEEEEEEEEECCEEECEEEEEECCCEEEEEECCCCC KSVLLDAIAKTFNKTNMNERSKDILINKDNFIVTYQKPDGENIEYHIDDKNNLDYLHIYQ HHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEECCCCCCCEEEEEC GEVKEIVDPKNPAILDNEIKKLLNLPIEEDPLNLTEPEVERLINEIFVIKDWLNYVDNEG CCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC NLLNSIEFNQRKKKEKVDLIETITTNENRQLINQYIENLNEINNITGNVKKVQQILSEME CEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH YFQNRMDIEIEKLNEDIDIQEDKIPFLNISIQIYRFRNYIQEKDKKVEELYQKNLKIDTK HHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEE FKNAGIKIDVTSLLEQIEIYQSEINNYKNKINEIHFKIEEINNKFSKLSKLADLILQSHH ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KRITYIDDRWTQLKNGKKYWNSEQKNITEELLNDIQVKALEIFDSKEFFAQIYGHHCLNL CEEEEECHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH RKFRGTQSQTQNERLEETFQIREQNDLLKLLKGEKVVNVDNVLLNLAELLDSDLFSKDGK HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHCCCCH REFLRILLLEKNRRKYWNVQTNSTYKGKEISHLSVGMRGTFYVCLKLATDPFIKPFVFDQ HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEHHCCCCCCCCCCCC PEDDLDNDFIMNSLVPIFKKIKKYRQVIIVTHNANLVVNADAEQVIVAKNEDEVLSYESG CCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCEEEEECCCCCEEEECCC AIENPAIKEQICKILEGGKPAFTMREKKYGFVNI CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC >Mature Secondary Structure MIEYPRGSEWAKWDLHIHTPESIINGYGNSADVWEEFLTDLESLPEDFKVLGINDYLFLD CCCCCCCCCCEEEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEC GYERIKHEKEINGRLPNIKLILPVVEFRIQKFAGVEFRNTKRINMHVIFSDELNVETIKS CHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCHHHHHH QFLNALEQSYTLTPGLDPELWNGSITRKSLEDLGSKIKATVPKDQLSSYGSDLIEGFNNL HHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHCCC NLNEKEILKVLKKRHYFKDKYLIAIGKTEWDLLQWSEGSISEKKNTINDAHLVFTSAESV CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCCHHHHCCCCCEEEEEECHHHH EHYIKAKEKLKEQGVNYLLLDCSDAHTFSHNTRKKDRIGNCFNWIKANPTFEGLRQVVFE HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH KFERIWIDEENPKKRYEKPFFSEIRIKTTNVFINSSVKFSGTVLPLNSNLVTIVGGRGTG HHHHHCCCCCCCHHHHCCCCHHHEEEEEEEEEEECCEEECEEEEEECCCEEEEEECCCCC KSVLLDAIAKTFNKTNMNERSKDILINKDNFIVTYQKPDGENIEYHIDDKNNLDYLHIYQ HHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEECCCCCCCEEEEEC GEVKEIVDPKNPAILDNEIKKLLNLPIEEDPLNLTEPEVERLINEIFVIKDWLNYVDNEG CCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC NLLNSIEFNQRKKKEKVDLIETITTNENRQLINQYIENLNEINNITGNVKKVQQILSEME CEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH YFQNRMDIEIEKLNEDIDIQEDKIPFLNISIQIYRFRNYIQEKDKKVEELYQKNLKIDTK HHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEE FKNAGIKIDVTSLLEQIEIYQSEINNYKNKINEIHFKIEEINNKFSKLSKLADLILQSHH ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KRITYIDDRWTQLKNGKKYWNSEQKNITEELLNDIQVKALEIFDSKEFFAQIYGHHCLNL CEEEEECHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH RKFRGTQSQTQNERLEETFQIREQNDLLKLLKGEKVVNVDNVLLNLAELLDSDLFSKDGK HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHCCCCH REFLRILLLEKNRRKYWNVQTNSTYKGKEISHLSVGMRGTFYVCLKLATDPFIKPFVFDQ HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEHHCCCCCCCCCCCC PEDDLDNDFIMNSLVPIFKKIKKYRQVIIVTHNANLVVNADAEQVIVAKNEDEVLSYESG CCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCEEEEECCCCCEEEECCC AIENPAIKEQICKILEGGKPAFTMREKKYGFVNI CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA