| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yleA [C]
Identifier: 21227624
GI number: 21227624
Start: 1815093
End: 1816217
Strand: Reverse
Name: yleA [C]
Synonym: MM_1522
Alternate gene names: 21227624
Gene position: 1816217-1815093 (Counterclockwise)
Preceding gene: 21227625
Following gene: 21227622
Centisome position: 44.34
GC content: 48.27
Gene sequence:
>1125_bases ATGGAAGTGAATTTTCGATACAGCAAAAAGAATTCCTACAGCTTTGCTGTACTTTCACCTGTGCTTCCTGAAGCGGGATT TACGGACAGTCCCGTTGACGGGATAATGATCTATAGTTTTACCACACGACAAGCAGCAAAAGTATTCAAAGAGGTAGAAA ACGCGGGTACGGACTCGATCTTCATCGCAGGAGGACCTCACCCTTCCGGGTGTCCGGAGGAGACGCTAAAATATTTCGAT TACGTGGTAATTGGAGAAGGCGAGGAAACTCTTCCGGAACTTGTAAGGGTCCTGCAGAAGAAAGGAGATCCCGGAGAGGT AAAGGGAATCGCTTACAAAAATCCGGATACCGGCAGAATAACCCTTACTCCTGAAAGGCCGCATGTAAATCTGGACTCAT ATCCCTGTTTTGACCCGAAGAAACTCCGCGCCCCTATTGAAATAAGCCGCGGATGTCCCTGGGGCTGCAAGTACTGCCAG ACTCCAAGACTTTTTGGGAGGGAGGTCAGGCACAGGAGCATTGATTCCATCCTGAAGAATGCACAGCACTATAACGACCT CCGCTTCATAGCTTCAAATGCTTTCGCTTATGGGAGTGATGGAATTCACCCCAGGTTCGATAAGGTAGAAAAACTGCTCT CTGCGCTTCACAAACTGCCCGATAAAAAAATCTTTTTCGGGACTTTCCCTTCCGAGGTCCGTCCCGAGTTCGTGACCGAA GAATCTGTAGAGCTTGTAAGAAAATACTGCGCAAACGACAGCCTCAGCCTAGGAGCCCAATCCGGCAGCGACAGAATCCT TAAAGAGATAAGAAGAGGTCATACGGTTGAAGACAGCATTTCCGCTGTAGAGTGCTGCCTTGAACATGACATTATGCCGG CGGTTGATTTTATCTTCGGGCTTCCGACAGAAACCGAAGAAGACCAGGAAAAAAGCCTTGAACTCGTGCGCTGGATCTGC GAAAAAGGCGGGACTGTCAGGGCACATTATATGACCCCACTTCCGGGAACTCCATACGCATCATCAGTGCCATCAGATGT CAGCGACCGTGTAAGGAGAGAGCTTGGAAAACTTGCCCTTGGGGGAAAATTAACAGGTTACTGGGAAAAACATAGAAAAG TTTAA
Upstream 100 bases:
>100_bases GCTTCACTCTAATCCCTTTCAAGCCCATAACCTGAAAAGAGAACAAAATCTGAAGCTTGCCAGGACCTGAAAAAGAACCT GAGAGAGGAAAAAAACAACA
Downstream 100 bases:
>100_bases ACGTAAGTTTAGAAGAGAAGTAAAAAGGAAAGTAAAAGAAGTAAAAAGAGTGAAAACGGGAATAAAAAGGAAAGTAAAAA GAAAAGTAAAAAGAAAAGTA
Product: Fe-S oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 374
Protein sequence:
>374_residues MEVNFRYSKKNSYSFAVLSPVLPEAGFTDSPVDGIMIYSFTTRQAAKVFKEVENAGTDSIFIAGGPHPSGCPEETLKYFD YVVIGEGEETLPELVRVLQKKGDPGEVKGIAYKNPDTGRITLTPERPHVNLDSYPCFDPKKLRAPIEISRGCPWGCKYCQ TPRLFGREVRHRSIDSILKNAQHYNDLRFIASNAFAYGSDGIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTE ESVELVRKYCANDSLSLGAQSGSDRILKEIRRGHTVEDSISAVECCLEHDIMPAVDFIFGLPTETEEDQEKSLELVRWIC EKGGTVRAHYMTPLPGTPYASSVPSDVSDRVRRELGKLALGGKLTGYWEKHRKV
Sequences:
>Translated_374_residues MEVNFRYSKKNSYSFAVLSPVLPEAGFTDSPVDGIMIYSFTTRQAAKVFKEVENAGTDSIFIAGGPHPSGCPEETLKYFD YVVIGEGEETLPELVRVLQKKGDPGEVKGIAYKNPDTGRITLTPERPHVNLDSYPCFDPKKLRAPIEISRGCPWGCKYCQ TPRLFGREVRHRSIDSILKNAQHYNDLRFIASNAFAYGSDGIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTE ESVELVRKYCANDSLSLGAQSGSDRILKEIRRGHTVEDSISAVECCLEHDIMPAVDFIFGLPTETEEDQEKSLELVRWIC EKGGTVRAHYMTPLPGTPYASSVPSDVSDRVRRELGKLALGGKLTGYWEKHRKV >Mature_374_residues MEVNFRYSKKNSYSFAVLSPVLPEAGFTDSPVDGIMIYSFTTRQAAKVFKEVENAGTDSIFIAGGPHPSGCPEETLKYFD YVVIGEGEETLPELVRVLQKKGDPGEVKGIAYKNPDTGRITLTPERPHVNLDSYPCFDPKKLRAPIEISRGCPWGCKYCQ TPRLFGREVRHRSIDSILKNAQHYNDLRFIASNAFAYGSDGIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTE ESVELVRKYCANDSLSLGAQSGSDRILKEIRRGHTVEDSISAVECCLEHDIMPAVDFIFGLPTETEEDQEKSLELVRWIC EKGGTVRAHYMTPLPGTPYASSVPSDVSDRVRRELGKLALGGKLTGYWEKHRKV
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1786882, Length=332, Percent_Identity=27.710843373494, Blast_Score=68, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 41942; Mature: 41942
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVNFRYSKKNSYSFAVLSPVLPEAGFTDSPVDGIMIYSFTTRQAAKVFKEVENAGTDSI CCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEE FIAGGPHPSGCPEETLKYFDYVVIGEGEETLPELVRVLQKKGDPGEVKGIAYKNPDTGRI EEECCCCCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEE TLTPERPHVNLDSYPCFDPKKLRAPIEISRGCPWGCKYCQTPRLFGREVRHRSIDSILKN EECCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AQHYNDLRFIASNAFAYGSDGIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTE HHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCH ESVELVRKYCANDSLSLGAQSGSDRILKEIRRGHTVEDSISAVECCLEHDIMPAVDFIFG HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHC LPTETEEDQEKSLELVRWICEKGGTVRAHYMTPLPGTPYASSVPSDVSDRVRRELGKLAL CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC GGKLTGYWEKHRKV CCCCCHHHHHHCCC >Mature Secondary Structure MEVNFRYSKKNSYSFAVLSPVLPEAGFTDSPVDGIMIYSFTTRQAAKVFKEVENAGTDSI CCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEE FIAGGPHPSGCPEETLKYFDYVVIGEGEETLPELVRVLQKKGDPGEVKGIAYKNPDTGRI EEECCCCCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEE TLTPERPHVNLDSYPCFDPKKLRAPIEISRGCPWGCKYCQTPRLFGREVRHRSIDSILKN EECCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH AQHYNDLRFIASNAFAYGSDGIHPRFDKVEKLLSALHKLPDKKIFFGTFPSEVRPEFVTE HHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCH ESVELVRKYCANDSLSLGAQSGSDRILKEIRRGHTVEDSISAVECCLEHDIMPAVDFIFG HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHC LPTETEEDQEKSLELVRWICEKGGTVRAHYMTPLPGTPYASSVPSDVSDRVRRELGKLAL CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC GGKLTGYWEKHRKV CCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]