| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227622
Identifier: 21227622
GI number: 21227622
Start: 1811671
End: 1812498
Strand: Reverse
Name: 21227622
Synonym: MM_1520
Alternate gene names: NA
Gene position: 1812498-1811671 (Counterclockwise)
Preceding gene: 21227624
Following gene: 21227621
Centisome position: 44.25
GC content: 44.2
Gene sequence:
>828_bases ATGGATATCGCCAGGATAGAAAAGATAAGAGAAGCTATTAAAGCCAGGGAAAGTGCAGTAATCGCATTCTCCGGGGGAGT GGACAGTACAACTCTTGCGGCTCTTGCATTTGAAGAGCTTGGGGACAGAGCACTTGCCGTTACAATAGATTCTCCACTTT TTCCCAGACACCAGCTTGAAACAGCTTCCCAGGCTGCCTGTGAAATAGGGATTCAGCATAAAATCCTCCCTTTTTCCCTG AACAGTGTGCCCTATTTTACTGCAAATACGATTAACAGGTGCTATTTCTGCAAAAAAGCACTTCTTGAAACCCTTCTCGA ATTCGCGGAAAAAACAGGATATAATGCCGTGCTTGAAGGAACAAATGCTTCAGAAATAAAAGGGGAAAACCGCCCCGGAT ACAGGGCGATTCAGGAAGCCGGAGAAAAGATTTATTCCCCGTTTGTAGAGTTTAACGTTACAAAAGAAGAGATAAGGGAA ATTGCTGCGAACCTCTCACTTTCTGCAGCCGGCAGACCGTCAGCAGCCTGTCTTGCCACACGCATCGCTTACGGACAGCC CATTACTCCCGAAGCTCTTGAGAAAATAGAAAAAGCCGAAGATTATCTGTTAGATCTGGGTTTTACTCAGTTCAGGATCA GGCTGCACTCAAACCTTGCCAGAATAGAGCTTACTCAAAAAGAAATTGAAGAAGCGTTCCGCAAGAGAGAAAAAATATCA AGGCATCTTAAAACACTTGGTTTTGACTATGTAACCCTTGACCTTGAGGGCTTCCGTTCAGGAAGCATGGATGAACCGTA TTTGCAGAAAAAATCCGAAGAAAAATAA
Upstream 100 bases:
>100_bases TCGATTAAATTCACCCATATTCTTTTACTCAGAATGCCGCGGAGCACCTGACTATAAGGCTGGAAAATACATATATCTTA TTAGCTGAAACTCGTTATTA
Downstream 100 bases:
>100_bases CCGTAAAAACACCGGCAGCTAAAAGGATATGACAGAAATTCAAATCAGAAAAGCCGAAAAAAAAGACCTGCTATCAATCC AGAGGCTTCTATCAACTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MDIARIEKIREAIKARESAVIAFSGGVDSTTLAALAFEELGDRALAVTIDSPLFPRHQLETASQAACEIGIQHKILPFSL NSVPYFTANTINRCYFCKKALLETLLEFAEKTGYNAVLEGTNASEIKGENRPGYRAIQEAGEKIYSPFVEFNVTKEEIRE IAANLSLSAAGRPSAACLATRIAYGQPITPEALEKIEKAEDYLLDLGFTQFRIRLHSNLARIELTQKEIEEAFRKREKIS RHLKTLGFDYVTLDLEGFRSGSMDEPYLQKKSEEK
Sequences:
>Translated_275_residues MDIARIEKIREAIKARESAVIAFSGGVDSTTLAALAFEELGDRALAVTIDSPLFPRHQLETASQAACEIGIQHKILPFSL NSVPYFTANTINRCYFCKKALLETLLEFAEKTGYNAVLEGTNASEIKGENRPGYRAIQEAGEKIYSPFVEFNVTKEEIRE IAANLSLSAAGRPSAACLATRIAYGQPITPEALEKIEKAEDYLLDLGFTQFRIRLHSNLARIELTQKEIEEAFRKREKIS RHLKTLGFDYVTLDLEGFRSGSMDEPYLQKKSEEK >Mature_275_residues MDIARIEKIREAIKARESAVIAFSGGVDSTTLAALAFEELGDRALAVTIDSPLFPRHQLETASQAACEIGIQHKILPFSL NSVPYFTANTINRCYFCKKALLETLLEFAEKTGYNAVLEGTNASEIKGENRPGYRAIQEAGEKIYSPFVEFNVTKEEIRE IAANLSLSAAGRPSAACLATRIAYGQPITPEALEKIEKAEDYLLDLGFTQFRIRLHSNLARIELTQKEIEEAFRKREKIS RHLKTLGFDYVTLDLEGFRSGSMDEPYLQKKSEEK
Specific function: Unknown
COG id: COG1606
COG function: function code R; ATP-utilizing enzymes of the PP-loop superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0830 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005232 - InterPro: IPR022310 - InterPro: IPR014729 [H]
Pfam domain/function: PF02540 NAD_synthase [H]
EC number: NA
Molecular weight: Translated: 30759; Mature: 30759
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIARIEKIREAIKARESAVIAFSGGVDSTTLAALAFEELGDRALAVTIDSPLFPRHQLE CCHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH TASQAACEIGIQHKILPFSLNSVPYFTANTINRCYFCKKALLETLLEFAEKTGYNAVLEG HHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC TNASEIKGENRPGYRAIQEAGEKIYSPFVEFNVTKEEIREIAANLSLSAAGRPSAACLAT CCHHHCCCCCCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH RIAYGQPITPEALEKIEKAEDYLLDLGFTQFRIRLHSNLARIELTQKEIEEAFRKREKIS HHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHEEECHHHHHHHHHHHHHHH RHLKTLGFDYVTLDLEGFRSGSMDEPYLQKKSEEK HHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCC >Mature Secondary Structure MDIARIEKIREAIKARESAVIAFSGGVDSTTLAALAFEELGDRALAVTIDSPLFPRHQLE CCHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH TASQAACEIGIQHKILPFSLNSVPYFTANTINRCYFCKKALLETLLEFAEKTGYNAVLEG HHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC TNASEIKGENRPGYRAIQEAGEKIYSPFVEFNVTKEEIREIAANLSLSAAGRPSAACLAT CCHHHCCCCCCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH RIAYGQPITPEALEKIEKAEDYLLDLGFTQFRIRLHSNLARIELTQKEIEEAFRKREKIS HHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHEEECHHHHHHHHHHHHHHH RHLKTLGFDYVTLDLEGFRSGSMDEPYLQKKSEEK HHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]