| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227612
Identifier: 21227612
GI number: 21227612
Start: 1799461
End: 1799943
Strand: Reverse
Name: 21227612
Synonym: MM_1510
Alternate gene names: NA
Gene position: 1799943-1799461 (Counterclockwise)
Preceding gene: 21227614
Following gene: 21227611
Centisome position: 43.94
GC content: 43.06
Gene sequence:
>483_bases GTGGAGGGTAAAAAATACAGGGAACTTTTTCAGGACTGCAAGGCAGTATCAGAGACAATAGGGCAGGTGCTTATGGTAGC TGTAGTTGTTCTGGCTTTTTCTTCAATCGCTGTTACAGTGTTTTCAGATGGAGGAGCGGTGAAACCACCTCATATTCCCT GTACTGATTTGCAGCAAAGTATTGACAGGTCCGGAGAGACCGTACAGATATTCCACAGCGGGGGAGAGGCAATCGATCTT GAAGACATCAAGATAATACTCAGCGTCAATGGGACACAGGCAGAATTCAATATGTCAGACTCCGGTGTCACATTCTATGA TGCAAAAGGCGAGACTTCTTCTGATGATGTCTTTATGCTCGGAGATTCCATATTAATCAACACCAGAGGCAGTGAAATTA ATATCATGGATGAAAATGCCATCATAGACTTCTATTTTGTGCATACGGAATCCAACCAGGTGATTAAGAAAGGAATACTC TGA
Upstream 100 bases:
>100_bases GTTGAAGAAATAGAGGGAATTTCTTAAAACAGTCAGGTTAATATTCAATTAAAAACATTATAAGAAGTTAGGTACAAAAT TGTAGAAGGTGACTGTTATC
Downstream 100 bases:
>100_bases AGAAAAAAGCAATTCTTTGAAGAGAGTTAAGGAATTGCTAAAAACTCTTTACTATTTTTAAGAAATGATTGTATAAACGG GCTCGTCCCAAACCCAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 160; Mature: 160
Protein sequence:
>160_residues MEGKKYRELFQDCKAVSETIGQVLMVAVVVLAFSSIAVTVFSDGGAVKPPHIPCTDLQQSIDRSGETVQIFHSGGEAIDL EDIKIILSVNGTQAEFNMSDSGVTFYDAKGETSSDDVFMLGDSILINTRGSEINIMDENAIIDFYFVHTESNQVIKKGIL
Sequences:
>Translated_160_residues MEGKKYRELFQDCKAVSETIGQVLMVAVVVLAFSSIAVTVFSDGGAVKPPHIPCTDLQQSIDRSGETVQIFHSGGEAIDL EDIKIILSVNGTQAEFNMSDSGVTFYDAKGETSSDDVFMLGDSILINTRGSEINIMDENAIIDFYFVHTESNQVIKKGIL >Mature_160_residues MEGKKYRELFQDCKAVSETIGQVLMVAVVVLAFSSIAVTVFSDGGAVKPPHIPCTDLQQSIDRSGETVQIFHSGGEAIDL EDIKIILSVNGTQAEFNMSDSGVTFYDAKGETSSDDVFMLGDSILINTRGSEINIMDENAIIDFYFVHTESNQVIKKGIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17416; Mature: 17416
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGKKYRELFQDCKAVSETIGQVLMVAVVVLAFSSIAVTVFSDGGAVKPPHIPCTDLQQS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHH IDRSGETVQIFHSGGEAIDLEDIKIILSVNGTQAEFNMSDSGVTFYDAKGETSSDDVFML HCCCCCEEEEEECCCCEEECCCEEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCEEEE GDSILINTRGSEINIMDENAIIDFYFVHTESNQVIKKGIL CCEEEEEECCCEEEEEECCCEEEEEEEEECCCHHHHCCCC >Mature Secondary Structure MEGKKYRELFQDCKAVSETIGQVLMVAVVVLAFSSIAVTVFSDGGAVKPPHIPCTDLQQS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHH IDRSGETVQIFHSGGEAIDLEDIKIILSVNGTQAEFNMSDSGVTFYDAKGETSSDDVFML HCCCCCEEEEEECCCCEEECCCEEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCEEEE GDSILINTRGSEINIMDENAIIDFYFVHTESNQVIKKGIL CCEEEEEECCCEEEEEECCCEEEEEEEEECCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA