| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227334
Identifier: 21227334
GI number: 21227334
Start: 1459082
End: 1460170
Strand: Reverse
Name: 21227334
Synonym: MM_1232
Alternate gene names: NA
Gene position: 1460170-1459082 (Counterclockwise)
Preceding gene: 21227335
Following gene: 21227332
Centisome position: 35.65
GC content: 43.8
Gene sequence:
>1089_bases ATGTCTTCAGGCATTTCGCTTCCCTTAAAAACAGAACATTCTGCCAGAGATCGTCTATACTGGAATTTTTTAAATGCGAT CCCTTTCCTTATTGGTTCGATAGCCGTCGCAAGGGACTCTCTCAAATTGGTAGCGGTTTACATAGGGATAGCCCTCATTT TCTTCCTGATTATCGAATTACGGTTCGCATGTACTCACTGCTCCTATTACGCTCGGAGCAAAGGATGCGTAAAATGCATG ATGCTTCCGGGAGTTCCAAAAATCTTTAAGGCCCGGCCCGGGTCTCACAGTCCTTTTGAAAAAGCAATGACCGTTCTTGG TACTCTTCCCATGTTCCTTTTTCCGGTTTACTGGCTTATCAGAGACCTTTTGCTGCTTGGAGCTTATATCGTAGCCTGGG CACTCTTCTTTCTGACGGCTCGGCGATATGCGTGTGTTCGTTGTATTAACTTTGAATGCCCCGTGAACCGTGTGTCTGTG GGCGTGAAAGAAGAATTTAAGAAAAGGGACGGCTTTCCCGGGAATATTGAGGTTTCAAAAGAGGAATTTTGGGCAGCAGG TTCAGGCAGATGTACTTCTCTTAGAGTAAAACATGAGTTTAAAGATTTTCTCTACTGGAATTTTGTAACTCTTACCATTT TATTTTCAGCTGGACTTGCTATCGGCATCAGTTCAACAGGATGGCTTCTTGCCTACATTTTCATAGCTTTTTTCCATTTT GGAATTCTGGAACAGCGTTTTTTCTGCACTCACTGCCCTTATTTTGTCAGGGGAGAAAAGTGTTTGAGGTGTATGATGAA CTGGGGCTGGCCAAGGCATTTTAAGCCCAGACCGCACCCGCCGGGCAAATTCGATATTGCCATTACATCTCTAGGGTTCA TGATCTTGATTTTCTTCCCTCTGCCGTTTCTGCTGGAAATTCCGTTTCTGCTGGGGACCTATCTTGTTTCCATATCGGTT TTTCTACTGACAATATGGCGGTATGAATGTGGTCGCTGTATCTATTTCGAGTGCCCTTTTAACAGGGTGCCGGCTGAAGT AAGGAAAGAGTTTGAAAAGAAAGATTTTGAAAGGATGATCTTGAAATAA
Upstream 100 bases:
>100_bases GAAATTTTAATTTTTGATTAGTATCCAATACAAGACTGCCCTCCAGCAAAATTCCTTAAGATCCAAAACTTTATACCTTT TACTTTCCCAAAAACTCCTC
Downstream 100 bases:
>100_bases AAATTTGAAAAAAATGAACTTGAAAAGAATGGAACTTGACCTGGAGCTTTGACCCGGAAGTTATCCGAAGTTCAGGTTTT TATCTTCAGATCTGTTTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MSSGISLPLKTEHSARDRLYWNFLNAIPFLIGSIAVARDSLKLVAVYIGIALIFFLIIELRFACTHCSYYARSKGCVKCM MLPGVPKIFKARPGSHSPFEKAMTVLGTLPMFLFPVYWLIRDLLLLGAYIVAWALFFLTARRYACVRCINFECPVNRVSV GVKEEFKKRDGFPGNIEVSKEEFWAAGSGRCTSLRVKHEFKDFLYWNFVTLTILFSAGLAIGISSTGWLLAYIFIAFFHF GILEQRFFCTHCPYFVRGEKCLRCMMNWGWPRHFKPRPHPPGKFDIAITSLGFMILIFFPLPFLLEIPFLLGTYLVSISV FLLTIWRYECGRCIYFECPFNRVPAEVRKEFEKKDFERMILK
Sequences:
>Translated_362_residues MSSGISLPLKTEHSARDRLYWNFLNAIPFLIGSIAVARDSLKLVAVYIGIALIFFLIIELRFACTHCSYYARSKGCVKCM MLPGVPKIFKARPGSHSPFEKAMTVLGTLPMFLFPVYWLIRDLLLLGAYIVAWALFFLTARRYACVRCINFECPVNRVSV GVKEEFKKRDGFPGNIEVSKEEFWAAGSGRCTSLRVKHEFKDFLYWNFVTLTILFSAGLAIGISSTGWLLAYIFIAFFHF GILEQRFFCTHCPYFVRGEKCLRCMMNWGWPRHFKPRPHPPGKFDIAITSLGFMILIFFPLPFLLEIPFLLGTYLVSISV FLLTIWRYECGRCIYFECPFNRVPAEVRKEFEKKDFERMILK >Mature_361_residues SSGISLPLKTEHSARDRLYWNFLNAIPFLIGSIAVARDSLKLVAVYIGIALIFFLIIELRFACTHCSYYARSKGCVKCMM LPGVPKIFKARPGSHSPFEKAMTVLGTLPMFLFPVYWLIRDLLLLGAYIVAWALFFLTARRYACVRCINFECPVNRVSVG VKEEFKKRDGFPGNIEVSKEEFWAAGSGRCTSLRVKHEFKDFLYWNFVTLTILFSAGLAIGISSTGWLLAYIFIAFFHFG ILEQRFFCTHCPYFVRGEKCLRCMMNWGWPRHFKPRPHPPGKFDIAITSLGFMILIFFPLPFLLEIPFLLGTYLVSISVF LLTIWRYECGRCIYFECPFNRVPAEVRKEFEKKDFERMILK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41890; Mature: 41759
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSGISLPLKTEHSARDRLYWNFLNAIPFLIGSIAVARDSLKLVAVYIGIALIFFLIIEL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFACTHCSYYARSKGCVKCMMLPGVPKIFKARPGSHSPFEKAMTVLGTLPMFLFPVYWLI HHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RDLLLLGAYIVAWALFFLTARRYACVRCINFECPVNRVSVGVKEEFKKRDGFPGNIEVSK HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHCCHHHHHHHCCCCCCCEEECH EEFWAAGSGRCTSLRVKHEFKDFLYWNFVTLTILFSAGLAIGISSTGWLLAYIFIAFFHF HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHH GILEQRFFCTHCPYFVRGEKCLRCMMNWGWPRHFKPRPHPPGKFDIAITSLGFMILIFFP HHHHHHHHHHCCCHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH LPFLLEIPFLLGTYLVSISVFLLTIWRYECGRCIYFECPFNRVPAEVRKEFEKKDFERMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH LK CC >Mature Secondary Structure SSGISLPLKTEHSARDRLYWNFLNAIPFLIGSIAVARDSLKLVAVYIGIALIFFLIIEL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFACTHCSYYARSKGCVKCMMLPGVPKIFKARPGSHSPFEKAMTVLGTLPMFLFPVYWLI HHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RDLLLLGAYIVAWALFFLTARRYACVRCINFECPVNRVSVGVKEEFKKRDGFPGNIEVSK HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHCCHHHHHHHCCCCCCCEEECH EEFWAAGSGRCTSLRVKHEFKDFLYWNFVTLTILFSAGLAIGISSTGWLLAYIFIAFFHF HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHH GILEQRFFCTHCPYFVRGEKCLRCMMNWGWPRHFKPRPHPPGKFDIAITSLGFMILIFFP HHHHHHHHHHCCCHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH LPFLLEIPFLLGTYLVSISVFLLTIWRYECGRCIYFECPFNRVPAEVRKEFEKKDFERMI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH LK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA