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The map label for this gene is radA [C]

Identifier: 21227192

GI number: 21227192

Start: 1282724

End: 1284148

Strand: Direct

Name: radA [C]

Synonym: MM_1090

Alternate gene names: 21227192

Gene position: 1282724-1284148 (Clockwise)

Preceding gene: 21227191

Following gene: 21227193

Centisome position: 31.31

GC content: 47.23

Gene sequence:

>1425_bases
ATGACACTAGTAGTTGATTATGTTCGTATTGATAAGAGCGAAATAGAAGAAACAGGCGAGTATGACCTGGAAGGACTGTT
CATAAGGCTCGGGCTGGCTATAGATTCCATAGGTGCCAAACGTGTTGCACTGGATACACTTGAGGTTCTGTTCTCAGGTT
TCCAGAACGAAGCGATACTGCGCTCTGAACTCCGCAGGCTCTTCCGGTGGCTAAAGGACAGGGGTGTAACAGCTATAGTC
ACCGGGGAAAGAGGAGAAACATCTCTTACAAGATACGGACTGGAAGAGTATGTCGCAGACTGTGTAATTTTCCTGGATAA
CAGAATGGAGGAACAGATTGCAACCAGGCGCCTGCGCATTATTAAGTATAGAGGCTCAAAGCACGGCACCAATGAGTATC
CCTTCATGATAGAGGAAGACGGAATGTCGGTACTGCCTATCACTTCATTGGGCCTGGAACATGAGGCATCTAGAGAAAGA
ATATCTACGGGCATACCGCGCCTGGATACGATGCTTGGAGGGCAGGGTTACTACCGCGGTACCACCATACTTATCTCAGG
AACAGCTGGTTCAGGAAAAACCAGTTTTGCAGCCCAGTTCTGTAAAGCTGCATGTGAAAGGGAGGAAAGCTGCCTGTACT
TCGCATATGAAGAGTCTCCAGACCAGATAATCAGGAACATGAGGTCCATAGGTATAGACCTCCAACCTTATTTAGACTCT
GGACTTCTGAAGATCCATGCATCCAGACCTATGGCGTACGGGCTGGAAATGCATCTGATTACAATGCGCAAATTCCTTGA
CACCTTCAAACCGAATGTTGTAGTCATAGACCCCATTTCTAACCTGACCAATGTGGGCACTCAGACCGATGTAAGGCTCA
TGCTCACCAGGTTTATCGATTACTTAAAGCTCAGGAATATTACTGCTGTGTGCACAAGCCTGGTAGAACACGAAAGTACT
GCTGGCATTAATGCTGAGGGCATATCTTCCCTTATGGATACCTGGGTCAACCTTCGCTTCTTCGAGAACAGCAATGAGCG
CAATCGTGGAATATCTGTTATTAAGTCGAGAGGCATGGGACATTCAAACCAGATAAGGGAGTATCTGCTGACTGATCATG
GTATAGAGATTCAGGATGTGTATCTGGGCCCATCCGGTGATCTGCTTATGGGTTCTTCTAAAGCAGTCCAAGAAGCTGAA
GAACTGGCAGAGGCAGTGGCTCAAAGACAGAATGCTGATAGAAAAAAGAGAGAACTTGAGACCAGGCTCAAATCTCTGGA
TACCCAGATTGCCAGCTTGAATTCTGAATATGAGACGCTGAAAGAGGAGCTTGACAGGCTTGTCTCCGACCAGCAACTGA
GGAACGAAGCGCTTGCAACTGGCAGAAGTGAGCTGGTTCGAATAAGGAAAGCCGATAAGCCCTGA

Upstream 100 bases:

>100_bases
CTAGTGTCATGACAATTTAATTATTGAGCATAATTTATAGTATTTCTATGTCAATACATAACGATTCTTAACTTATAAAA
TGACCAAAGACTAAATGTTC

Downstream 100 bases:

>100_bases
ATGGGCGTGGTTTATGCAGGCAACAATCTCAAAACCCGGGCAAGTGGACATTTTCGTTATCCAATAGTCTATGTTAAAAA
TGTATGGGGTTCAAAAAATA

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MTLVVDYVRIDKSEIEETGEYDLEGLFIRLGLAIDSIGAKRVALDTLEVLFSGFQNEAILRSELRRLFRWLKDRGVTAIV
TGERGETSLTRYGLEEYVADCVIFLDNRMEEQIATRRLRIIKYRGSKHGTNEYPFMIEEDGMSVLPITSLGLEHEASRER
ISTGIPRLDTMLGGQGYYRGTTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEESPDQIIRNMRSIGIDLQPYLDS
GLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDPISNLTNVGTQTDVRLMLTRFIDYLKLRNITAVCTSLVEHEST
AGINAEGISSLMDTWVNLRFFENSNERNRGISVIKSRGMGHSNQIREYLLTDHGIEIQDVYLGPSGDLLMGSSKAVQEAE
ELAEAVAQRQNADRKKRELETRLKSLDTQIASLNSEYETLKEELDRLVSDQQLRNEALATGRSELVRIRKADKP

Sequences:

>Translated_474_residues
MTLVVDYVRIDKSEIEETGEYDLEGLFIRLGLAIDSIGAKRVALDTLEVLFSGFQNEAILRSELRRLFRWLKDRGVTAIV
TGERGETSLTRYGLEEYVADCVIFLDNRMEEQIATRRLRIIKYRGSKHGTNEYPFMIEEDGMSVLPITSLGLEHEASRER
ISTGIPRLDTMLGGQGYYRGTTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEESPDQIIRNMRSIGIDLQPYLDS
GLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDPISNLTNVGTQTDVRLMLTRFIDYLKLRNITAVCTSLVEHEST
AGINAEGISSLMDTWVNLRFFENSNERNRGISVIKSRGMGHSNQIREYLLTDHGIEIQDVYLGPSGDLLMGSSKAVQEAE
ELAEAVAQRQNADRKKRELETRLKSLDTQIASLNSEYETLKEELDRLVSDQQLRNEALATGRSELVRIRKADKP
>Mature_473_residues
TLVVDYVRIDKSEIEETGEYDLEGLFIRLGLAIDSIGAKRVALDTLEVLFSGFQNEAILRSELRRLFRWLKDRGVTAIVT
GERGETSLTRYGLEEYVADCVIFLDNRMEEQIATRRLRIIKYRGSKHGTNEYPFMIEEDGMSVLPITSLGLEHEASRERI
STGIPRLDTMLGGQGYYRGTTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEESPDQIIRNMRSIGIDLQPYLDSG
LLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDPISNLTNVGTQTDVRLMLTRFIDYLKLRNITAVCTSLVEHESTA
GINAEGISSLMDTWVNLRFFENSNERNRGISVIKSRGMGHSNQIREYLLTDHGIEIQDVYLGPSGDLLMGSSKAVQEAEE
LAEAVAQRQNADRKKRELETRLKSLDTQIASLNSEYETLKEELDRLVSDQQLRNEALATGRSELVRIRKADKP

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 53522; Mature: 53391

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVVDYVRIDKSEIEETGEYDLEGLFIRLGLAIDSIGAKRVALDTLEVLFSGFQNEAIL
CEEEEEEHHCCHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
RSELRRLFRWLKDRGVTAIVTGERGETSLTRYGLEEYVADCVIFLDNRMEEQIATRRLRI
HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
IKYRGSKHGTNEYPFMIEEDGMSVLPITSLGLEHEASRERISTGIPRLDTMLGGQGYYRG
EEEECCCCCCCCCCEEECCCCCEEEEEHHCCCCCHHHHHHHHCCCCHHHHHHCCCCEECC
TTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEESPDQIIRNMRSIGIDLQPYLDS
EEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHCC
GLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDPISNLTNVGTQTDVRLMLTRFID
CEEEEECCCCCHHCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHCCCCHHHHHHHHHHHH
YLKLRNITAVCTSLVEHESTAGINAEGISSLMDTWVNLRFFENSNERNRGISVIKSRGMG
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCC
HSNQIREYLLTDHGIEIQDVYLGPSGDLLMGSSKAVQEAEELAEAVAQRQNADRKKRELE
CHHHHHHHHHHCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TRLKSLDTQIASLNSEYETLKEELDRLVSDQQLRNEALATGRSELVRIRKADKP
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TLVVDYVRIDKSEIEETGEYDLEGLFIRLGLAIDSIGAKRVALDTLEVLFSGFQNEAIL
EEEEEEHHCCHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
RSELRRLFRWLKDRGVTAIVTGERGETSLTRYGLEEYVADCVIFLDNRMEEQIATRRLRI
HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
IKYRGSKHGTNEYPFMIEEDGMSVLPITSLGLEHEASRERISTGIPRLDTMLGGQGYYRG
EEEECCCCCCCCCCEEECCCCCEEEEEHHCCCCCHHHHHHHHCCCCHHHHHHCCCCEECC
TTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEESPDQIIRNMRSIGIDLQPYLDS
EEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHCC
GLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDPISNLTNVGTQTDVRLMLTRFID
CEEEEECCCCCHHCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHCCCCHHHHHHHHHHHH
YLKLRNITAVCTSLVEHESTAGINAEGISSLMDTWVNLRFFENSNERNRGISVIKSRGMG
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCC
HSNQIREYLLTDHGIEIQDVYLGPSGDLLMGSSKAVQEAEELAEAVAQRQNADRKKRELE
CHHHHHHHHHHCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TRLKSLDTQIASLNSEYETLKEELDRLVSDQQLRNEALATGRSELVRIRKADKP
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]