| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226840
Identifier: 21226840
GI number: 21226840
Start: 885592
End: 885975
Strand: Direct
Name: 21226840
Synonym: MM_0738
Alternate gene names: NA
Gene position: 885592-885975 (Clockwise)
Preceding gene: 21226839
Following gene: 21226843
Centisome position: 21.62
GC content: 48.18
Gene sequence:
>384_bases ATGGCAGAAGAAACAAAATGTTCATGCGGCTCGGCAAATGTCGGAATCTTTGCCTGCAGCGGAGCGTCCAACGTCGGTCA GATAGCGAACAAAATTGCAGTCGAACTTACAAAGCAGGAAGTCGGGAAAATGATGTGCACCGTCGGGATTGGCGGCAGGA TCAACGGGCTCCTGAAATCGGCCGAAGGTTCCGAGAGGCTTATAGCTATTGACGGCTGCCCCTTAAACTGCACGAAAGAG ACCCTTGAACTTGCAGGATTTACCCCGGACAGGCATATTGTGATCTCCGAGTTAGGAATCAAAAAGAACAAAGATCTGGA TCTTAAAGACGAAGAAGTTAAGGAAGCAAGGGACAAAGTAAAAGAGATACTGCAATCCGAGTGA
Upstream 100 bases:
>100_bases TGACGGAGACGTCAAAGTCGCAGGAAAAGTCCCAAGCGTGGAAGACATCAAGAAATGGATCACCAAATGAGAGTCACTAA ACAAACAGGAGAGAAAAATA
Downstream 100 bases:
>100_bases CACCCATATTTTCGTTATACTTTTTATCTTAGGTGACCTCATCACACATTCGTTATACTTTTTTATCTTTACACATTTTT TTCTCTATATCTTTTTTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: DGC Domain-Containing Protein; Lipoprotein; DGC Domain Superfamily; Dgc Domain Protein; Lipoprotein COG
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MAEETKCSCGSANVGIFACSGASNVGQIANKIAVELTKQEVGKMMCTVGIGGRINGLLKSAEGSERLIAIDGCPLNCTKE TLELAGFTPDRHIVISELGIKKNKDLDLKDEEVKEARDKVKEILQSE
Sequences:
>Translated_127_residues MAEETKCSCGSANVGIFACSGASNVGQIANKIAVELTKQEVGKMMCTVGIGGRINGLLKSAEGSERLIAIDGCPLNCTKE TLELAGFTPDRHIVISELGIKKNKDLDLKDEEVKEARDKVKEILQSE >Mature_126_residues AEETKCSCGSANVGIFACSGASNVGQIANKIAVELTKQEVGKMMCTVGIGGRINGLLKSAEGSERLIAIDGCPLNCTKET LELAGFTPDRHIVISELGIKKNKDLDLKDEEVKEARDKVKEILQSE
Specific function: Unknown
COG id: COG4273
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13553; Mature: 13422
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 4.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEETKCSCGSANVGIFACSGASNVGQIANKIAVELTKQEVGKMMCTVGIGGRINGLLKS CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHC AEGSERLIAIDGCPLNCTKETLELAGFTPDRHIVISELGIKKNKDLDLKDEEVKEARDKV CCCCCEEEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH KEILQSE HHHHCCC >Mature Secondary Structure AEETKCSCGSANVGIFACSGASNVGQIANKIAVELTKQEVGKMMCTVGIGGRINGLLKS CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHC AEGSERLIAIDGCPLNCTKETLELAGFTPDRHIVISELGIKKNKDLDLKDEEVKEARDKV CCCCCEEEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH KEILQSE HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA