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The map label for this gene is ygcB [C]

Identifier: 20809004

GI number: 20809004

Start: 2557548

End: 2559746

Strand: Reverse

Name: ygcB [C]

Synonym: TTE2660

Alternate gene names: 20809004

Gene position: 2559746-2557548 (Counterclockwise)

Preceding gene: 20809005

Following gene: 20809003

Centisome position: 95.18

GC content: 40.61

Gene sequence:

>2199_bases
ATGGATGCCAGGGGTCTTCTAGCTAAACCTGATGAAACACTGCTGGAACATCTTAAAAAAGTGGTAGAAGAAGGGAGAAA
AATAGCCCACTTTTTAGGACTTTCTCCCGAGATGCGTGAAAAAGCCCTTTTAGCCTGCCTATTTCACGATTTGGGTAAAG
CAACGGAGAGTTTTCAAGCTAAAATGAGAGGGGAAAGAGGCAGGGCTTATCCCCATCCCCTTGCCTCTTTGCCCTTCATA
ATAGTAACGGGTAATTTATCCGATCCTTTGAGCCTTGCCGCTGCGGCTGCTGTGCTTACCCATCATTCCCCTTTGAATAA
AGATCTTTATAGGGAATTTAAAGATAAATCTGCTGATTATGTGAGCGAAGAGACTTTAAAGGACTTACTTCAGGGGTTAT
CAGATCTACTTGATAAATACGAGCTGGGGGACCATTTTCCCCTTTATGAATCTCTTAAACTCATCAGATTGTATAACAAA
AGGTCGGCTTTACTCTTAGAACAAAACCTCAGGTTTGGAGGAGAAACTAAAACCTTAAGGCTTATTTTCAAAGAATTACC
TTCACAAGAATATGCAGCAATAAAGACCGTTCTGATGCTTGCCGATTGGTTGATTTCCTCTAGAAAATTTTCTGCTGAAG
ATCTATTTCTCTTTGAAGGGGGAAACAAGCTAAAAGCCTATTTAAGTCAGAAAAATTGGGTGCTTAGAGAATTTCAACGT
AAGATTTCTCAACTTCCAGAAAAAAGGGTGTGGCTAAGGGCTCCCACAGGCACGGGTAAAACAGAGGCTCTCCTCCTCTG
GGCCAACGATGCCGAGCGTATAATCTATCTCCTGCCTACCCAGGCCACAGCCAATGCCATGTGGAAGAGGCTTAGAGCTA
TTTACGGAGAAGATAAAGTGGGATTGGCCCATGGAAGAGCAGGATACATTTTGAGAAAGGAAATAGAAGAAGAGCCTTTA
GACTTTAAACTTTGGGCTTCAGTTTTTGCTAAACCTGTAGTGGTAGCCACCGTGGACCAATATTTATTGGCCCATCTTCA
AGGTAGACATTGGGAAATACGCCGGACTCTGGCTAAAAATTCTGCTTTAATAATGGACGAAATTCACAGTTACGACCCCT
ATACTTTAGGTCTCCTCAAAGCAGCTTTAGAAAAAGAACCTCCCTACAAATTAGCTTTAGCTAGTGCCACTTTACCAGAA
TTTTTAATTTCTTTGCTGGGGGAAGGTCCTCTGGTGGAAGCGGAAAAAAACCTGTGGAAAAGAAAGAGGCATAAAATTAT
CTTGCATTCTGATTATTTAGATCATTATATTTCTCAAATTATTGAAGAAGCCCGTAAGGGACATAAGGTTTTAGTCATTG
TTAATACAGTGGCCAAGGCCCAAGAAATATATCAGCTTTTATATGGACTTTTAAAAAATAAAATTTCATATTTAGACGAA
TCACTTCTACAGCTTTTACATGCTCGTTTTGCCTTTAAAGATCGTTGGGAAAAGGAAGAAAAATTGCAAAACCCCCCTCC
CGCAACCATATTGATATCCACCCAAATAGTAGAAGTGAGTTTAGATATTTCTTTTGATGTGCTTTTTACAGAAATAGCAC
CAATTGATGCTTTGGTCCAAAGATTAGGCAGGGTTAACCGAAGAGGAGATAACCCTCCTGCTCCTGTACATGTGTTTTTG
GAATGGTATCCCGGGTCAGAAAAGATTTATGGCAAAAATATTTTGGAGATAAGTACGGAAATTTTAAGAGACATACAATC
TGAACCTAGTGATGGAGAGTGGGTGCAGGCTACCAATGAACTTTATAGAAAGCTGGTTTTCAGTCCAGCTTATCAAAAAG
ACCTTCAAGAGGGAGAAAAAACATTGAAGGAAATACAGCACATTTTAGGTTGCTACACTATAGACCTTTCCGATGAAGAA
CTACAGAAAAAATTTACTACTCGGAAAGGTCAGCTTTCAGTGGAAGTTTTGCCTTACATTTTTAAAGACCAGGTCTATAC
CTTAAAAGAACAAGGAGAATTGTGGCGTTTGGTGGAATTTTTGGTTCCTGTGCCCTTGTGGTGGCTGGGGACGTATCCTC
AGTGGTTTTCTAAAGACGAGGACCTGGCTGTATATTGGACGGATTTACCTTATGATGAAAAAGTGGGTCTGAGATTGCCG
GGAGAAGAAGAAAGTCCTTCAGGTGCGGAGATATGTTAA

Upstream 100 bases:

>100_bases
TAAATATACAGCCATTCACTTTTCTTCCTTACGGGGTAGAAATAGAAACAAAAGATATAGAGGCTTTTACTGCTCCTATT
CTAGAAGGGAGGAATTTCAC

Downstream 100 bases:

>100_bases
AAAGGATATGCTGGAAAGAAAATCTGCAAGGGAATTTTAAATAATATTAAAAGGTGAATGAAGTTAAATTTAAGGAGTGT
CTGTATGAGCATGCCTTTTT

Product: helicases

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MDARGLLAKPDETLLEHLKKVVEEGRKIAHFLGLSPEMREKALLACLFHDLGKATESFQAKMRGERGRAYPHPLASLPFI
IVTGNLSDPLSLAAAAAVLTHHSPLNKDLYREFKDKSADYVSEETLKDLLQGLSDLLDKYELGDHFPLYESLKLIRLYNK
RSALLLEQNLRFGGETKTLRLIFKELPSQEYAAIKTVLMLADWLISSRKFSAEDLFLFEGGNKLKAYLSQKNWVLREFQR
KISQLPEKRVWLRAPTGTGKTEALLLWANDAERIIYLLPTQATANAMWKRLRAIYGEDKVGLAHGRAGYILRKEIEEEPL
DFKLWASVFAKPVVVATVDQYLLAHLQGRHWEIRRTLAKNSALIMDEIHSYDPYTLGLLKAALEKEPPYKLALASATLPE
FLISLLGEGPLVEAEKNLWKRKRHKIILHSDYLDHYISQIIEEARKGHKVLVIVNTVAKAQEIYQLLYGLLKNKISYLDE
SLLQLLHARFAFKDRWEKEEKLQNPPPATILISTQIVEVSLDISFDVLFTEIAPIDALVQRLGRVNRRGDNPPAPVHVFL
EWYPGSEKIYGKNILEISTEILRDIQSEPSDGEWVQATNELYRKLVFSPAYQKDLQEGEKTLKEIQHILGCYTIDLSDEE
LQKKFTTRKGQLSVEVLPYIFKDQVYTLKEQGELWRLVEFLVPVPLWWLGTYPQWFSKDEDLAVYWTDLPYDEKVGLRLP
GEEESPSGAEIC

Sequences:

>Translated_732_residues
MDARGLLAKPDETLLEHLKKVVEEGRKIAHFLGLSPEMREKALLACLFHDLGKATESFQAKMRGERGRAYPHPLASLPFI
IVTGNLSDPLSLAAAAAVLTHHSPLNKDLYREFKDKSADYVSEETLKDLLQGLSDLLDKYELGDHFPLYESLKLIRLYNK
RSALLLEQNLRFGGETKTLRLIFKELPSQEYAAIKTVLMLADWLISSRKFSAEDLFLFEGGNKLKAYLSQKNWVLREFQR
KISQLPEKRVWLRAPTGTGKTEALLLWANDAERIIYLLPTQATANAMWKRLRAIYGEDKVGLAHGRAGYILRKEIEEEPL
DFKLWASVFAKPVVVATVDQYLLAHLQGRHWEIRRTLAKNSALIMDEIHSYDPYTLGLLKAALEKEPPYKLALASATLPE
FLISLLGEGPLVEAEKNLWKRKRHKIILHSDYLDHYISQIIEEARKGHKVLVIVNTVAKAQEIYQLLYGLLKNKISYLDE
SLLQLLHARFAFKDRWEKEEKLQNPPPATILISTQIVEVSLDISFDVLFTEIAPIDALVQRLGRVNRRGDNPPAPVHVFL
EWYPGSEKIYGKNILEISTEILRDIQSEPSDGEWVQATNELYRKLVFSPAYQKDLQEGEKTLKEIQHILGCYTIDLSDEE
LQKKFTTRKGQLSVEVLPYIFKDQVYTLKEQGELWRLVEFLVPVPLWWLGTYPQWFSKDEDLAVYWTDLPYDEKVGLRLP
GEEESPSGAEIC
>Mature_732_residues
MDARGLLAKPDETLLEHLKKVVEEGRKIAHFLGLSPEMREKALLACLFHDLGKATESFQAKMRGERGRAYPHPLASLPFI
IVTGNLSDPLSLAAAAAVLTHHSPLNKDLYREFKDKSADYVSEETLKDLLQGLSDLLDKYELGDHFPLYESLKLIRLYNK
RSALLLEQNLRFGGETKTLRLIFKELPSQEYAAIKTVLMLADWLISSRKFSAEDLFLFEGGNKLKAYLSQKNWVLREFQR
KISQLPEKRVWLRAPTGTGKTEALLLWANDAERIIYLLPTQATANAMWKRLRAIYGEDKVGLAHGRAGYILRKEIEEEPL
DFKLWASVFAKPVVVATVDQYLLAHLQGRHWEIRRTLAKNSALIMDEIHSYDPYTLGLLKAALEKEPPYKLALASATLPE
FLISLLGEGPLVEAEKNLWKRKRHKIILHSDYLDHYISQIIEEARKGHKVLVIVNTVAKAQEIYQLLYGLLKNKISYLDE
SLLQLLHARFAFKDRWEKEEKLQNPPPATILISTQIVEVSLDISFDVLFTEIAPIDALVQRLGRVNRRGDNPPAPVHVFL
EWYPGSEKIYGKNILEISTEILRDIQSEPSDGEWVQATNELYRKLVFSPAYQKDLQEGEKTLKEIQHILGCYTIDLSDEE
LQKKFTTRKGQLSVEVLPYIFKDQVYTLKEQGELWRLVEFLVPVPLWWLGTYPQWFSKDEDLAVYWTDLPYDEKVGLRLP
GEEESPSGAEIC

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=364, Percent_Identity=32.1428571428571, Blast_Score=136, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 83998; Mature: 83998

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARGLLAKPDETLLEHLKKVVEEGRKIAHFLGLSPEMREKALLACLFHDLGKATESFQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KMRGERGRAYPHPLASLPFIIVTGNLSDPLSLAAAAAVLTHHSPLNKDLYREFKDKSADY
HHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH
VSEETLKDLLQGLSDLLDKYELGDHFPLYESLKLIRLYNKRSALLLEQNLRFGGETKTLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHH
LIFKELPSQEYAAIKTVLMLADWLISSRKFSAEDLFLFEGGNKLKAYLSQKNWVLREFQR
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHH
KISQLPEKRVWLRAPTGTGKTEALLLWANDAERIIYLLPTQATANAMWKRLRAIYGEDKV
HHHHCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
GLAHGRAGYILRKEIEEEPLDFKLWASVFAKPVVVATVDQYLLAHLQGRHWEIRRTLAKN
EECCCCCCHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
SALIMDEIHSYDPYTLGLLKAALEKEPPYKLALASATLPEFLISLLGEGPLVEAEKNLWK
CCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHH
RKRHKIILHSDYLDHYISQIIEEARKGHKVLVIVNTVAKAQEIYQLLYGLLKNKISYLDE
HHHCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLQLLHARFAFKDRWEKEEKLQNPPPATILISTQIVEVSLDISFDVLFTEIAPIDALVQ
HHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEEEEEEECCEEEHHHHHHCCHHHHHH
RLGRVNRRGDNPPAPVHVFLEWYPGSEKIYGKNILEISTEILRDIQSEPSDGEWVQATNE
HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LYRKLVFSPAYQKDLQEGEKTLKEIQHILGCYTIDLSDEELQKKFTTRKGQLSVEVLPYI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHCCCCCCEEEEEHHHH
FKDQVYTLKEQGELWRLVEFLVPVPLWWLGTYPQWFSKDEDLAVYWTDLPYDEKVGLRLP
HHCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCCCC
GEEESPSGAEIC
CCCCCCCCCCCC
>Mature Secondary Structure
MDARGLLAKPDETLLEHLKKVVEEGRKIAHFLGLSPEMREKALLACLFHDLGKATESFQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KMRGERGRAYPHPLASLPFIIVTGNLSDPLSLAAAAAVLTHHSPLNKDLYREFKDKSADY
HHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHH
VSEETLKDLLQGLSDLLDKYELGDHFPLYESLKLIRLYNKRSALLLEQNLRFGGETKTLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHH
LIFKELPSQEYAAIKTVLMLADWLISSRKFSAEDLFLFEGGNKLKAYLSQKNWVLREFQR
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHH
KISQLPEKRVWLRAPTGTGKTEALLLWANDAERIIYLLPTQATANAMWKRLRAIYGEDKV
HHHHCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
GLAHGRAGYILRKEIEEEPLDFKLWASVFAKPVVVATVDQYLLAHLQGRHWEIRRTLAKN
EECCCCCCHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHC
SALIMDEIHSYDPYTLGLLKAALEKEPPYKLALASATLPEFLISLLGEGPLVEAEKNLWK
CCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHH
RKRHKIILHSDYLDHYISQIIEEARKGHKVLVIVNTVAKAQEIYQLLYGLLKNKISYLDE
HHHCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLQLLHARFAFKDRWEKEEKLQNPPPATILISTQIVEVSLDISFDVLFTEIAPIDALVQ
HHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEEEEEEECCEEEHHHHHHCCHHHHHH
RLGRVNRRGDNPPAPVHVFLEWYPGSEKIYGKNILEISTEILRDIQSEPSDGEWVQATNE
HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LYRKLVFSPAYQKDLQEGEKTLKEIQHILGCYTIDLSDEELQKKFTTRKGQLSVEVLPYI
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHCCCCCCEEEEEHHHH
FKDQVYTLKEQGELWRLVEFLVPVPLWWLGTYPQWFSKDEDLAVYWTDLPYDEKVGLRLP
HHCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCCCC
GEEESPSGAEIC
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]