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The map label for this gene is DppB6 [H]

Identifier: 20808877

GI number: 20808877

Start: 2414274

End: 2415239

Strand: Direct

Name: DppB6 [H]

Synonym: TTE2523

Alternate gene names: 20808877

Gene position: 2414274-2415239 (Clockwise)

Preceding gene: 20808876

Following gene: 20808878

Centisome position: 89.77

GC content: 39.96

Gene sequence:

>966_bases
ATGACACAGTTTATAATAAGAAGGCTTTTGCAGAGCATTCCGACATTGATAGGAGCATCCATAATAATATTTTTAATTTT
TGCTCTTGCTCCTGGCGATTACGTAACAAGGCAGTTTGAAAACCCTAAAATGACTCCGGAGAGAATGGAACAGTTAAGAG
CGCTATATGGCCTTGACAAGCCCTTACCAGAAAGATATTTAAGATGGGCTGGAAACATGCTAAGAGGCGAAATGGGAGAC
TCTTTAATGTTTAAAAAGCCTGTCATAAGCGTGATAAACGACTTTATATGGAACTCTTTCCTTTTAGGAGTTGCCATAAT
GTTTTTTGAATGGTTGATCGCCTCAATAATAGGCATATACTCGGCAGTCCGACAGTACTCTGTCTTTGACACGATAGCTA
CTTTGATAATTTTTATGTTATATTCCCTGCCATCTTTCTTCCTGGGACTACTTCTCCTCAAAATCTTTGCTGTGGACTTG
AGATGGTTCCCAGTAGGTGGCATGATAACCACAGGTTCAAACTACACTGGATGGGCTCATATAACGGATGTAGCAAAACA
CATGGTACTTCCTGTTGCAACCTTGACTTTGATAAGTGTAGGGGGATTGAGCCGTTACTTCAGAGCTAATATGCTAGAGG
TTATCAAACAGGATTATATAAGGACAGCGAGAGCGAAAGGATTAAAGGAAAGGACTGTTATTTTCAAACACGCTTTGAGA
AATGCACTTTTGCCTTTAATCACACTTTTCACACTTGAAATACCAAGCCTCTTCGCAGGTGCAATGATAACAGAGAGAAT
ATACAACTGGCCAGGAATTGGTAAAGTGGTTCTCCAAGCGATTTACGTAAGGGACTATCCTTTATTCTTAGGCTATACCA
TGTTAATAACCGTACTTACAATCCTGGCAAATATCCTGGCAGACGTATTATACGGAATAGCCGATCCTAGGGTAAGGCTT
AAATAA

Upstream 100 bases:

>100_bases
TTACTCGCTCTATCAGGCAGAACTTCTCCAGTATTAAATTAAGTAAGAAAAGCCCGGACTTAGGGCCGGGCTTTTCCAAT
GCATTTTAGGAGGGGATTTG

Downstream 100 bases:

>100_bases
GGAGGGATAAAGTTTGGAGAGGTTAACTCCAACACTTGACTATAGAAAAAATCGCAAAAAAGGCGGTACTTCACTGTGGC
AAGATGCCTTTCGCCGCTTT

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MTQFIIRRLLQSIPTLIGASIIIFLIFALAPGDYVTRQFENPKMTPERMEQLRALYGLDKPLPERYLRWAGNMLRGEMGD
SLMFKKPVISVINDFIWNSFLLGVAIMFFEWLIASIIGIYSAVRQYSVFDTIATLIIFMLYSLPSFFLGLLLLKIFAVDL
RWFPVGGMITTGSNYTGWAHITDVAKHMVLPVATLTLISVGGLSRYFRANMLEVIKQDYIRTARAKGLKERTVIFKHALR
NALLPLITLFTLEIPSLFAGAMITERIYNWPGIGKVVLQAIYVRDYPLFLGYTMLITVLTILANILADVLYGIADPRVRL
K

Sequences:

>Translated_321_residues
MTQFIIRRLLQSIPTLIGASIIIFLIFALAPGDYVTRQFENPKMTPERMEQLRALYGLDKPLPERYLRWAGNMLRGEMGD
SLMFKKPVISVINDFIWNSFLLGVAIMFFEWLIASIIGIYSAVRQYSVFDTIATLIIFMLYSLPSFFLGLLLLKIFAVDL
RWFPVGGMITTGSNYTGWAHITDVAKHMVLPVATLTLISVGGLSRYFRANMLEVIKQDYIRTARAKGLKERTVIFKHALR
NALLPLITLFTLEIPSLFAGAMITERIYNWPGIGKVVLQAIYVRDYPLFLGYTMLITVLTILANILADVLYGIADPRVRL
K
>Mature_320_residues
TQFIIRRLLQSIPTLIGASIIIFLIFALAPGDYVTRQFENPKMTPERMEQLRALYGLDKPLPERYLRWAGNMLRGEMGDS
LMFKKPVISVINDFIWNSFLLGVAIMFFEWLIASIIGIYSAVRQYSVFDTIATLIIFMLYSLPSFFLGLLLLKIFAVDLR
WFPVGGMITTGSNYTGWAHITDVAKHMVLPVATLTLISVGGLSRYFRANMLEVIKQDYIRTARAKGLKERTVIFKHALRN
ALLPLITLFTLEIPSLFAGAMITERIYNWPGIGKVVLQAIYVRDYPLFLGYTMLITVLTILANILADVLYGIADPRVRLK

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=37.5739644970414, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1787053, Length=321, Percent_Identity=32.7102803738318, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789888, Length=321, Percent_Identity=33.6448598130841, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=35.2941176470588, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=29.6703296703297, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787761, Length=318, Percent_Identity=30.5031446540881, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=26.4925373134328, Blast_Score=117, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36487; Mature: 36356

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQFIIRRLLQSIPTLIGASIIIFLIFALAPGDYVTRQFENPKMTPERMEQLRALYGLDK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCC
PLPERYLRWAGNMLRGEMGDSLMFKKPVISVINDFIWNSFLLGVAIMFFEWLIASIIGIY
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVRQYSVFDTIATLIIFMLYSLPSFFLGLLLLKIFAVDLRWFPVGGMITTGSNYTGWAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
ITDVAKHMVLPVATLTLISVGGLSRYFRANMLEVIKQDYIRTARAKGLKERTVIFKHALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NALLPLITLFTLEIPSLFAGAMITERIYNWPGIGKVVLQAIYVRDYPLFLGYTMLITVLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ILANILADVLYGIADPRVRLK
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TQFIIRRLLQSIPTLIGASIIIFLIFALAPGDYVTRQFENPKMTPERMEQLRALYGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCC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HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]