Click here to switch to the map view.

The map label for this gene is RPL30

Identifier: 20094121

GI number: 20094121

Start: 641451

End: 641780

Strand: Reverse

Name: RPL30

Synonym: MK0683

Alternate gene names: 20094121

Gene position: 641780-641451 (Counterclockwise)

Preceding gene: 20094122

Following gene: 20094120

Centisome position: 37.86

GC content: 58.79

Gene sequence:

>330_bases
CTGCAGGAGATTGAGCGTCAGATCCGCATGGCTGTCGAGACTGGAGACGTCGTGTTAGGATCCAACCAGACCATCAAGCT
ACTGAAACTAGGGAAGCCCAAGCTAGTGATCGTAGCGGCGAACTGTCCGGCCGAAATCCGTGAAGACATCGAGTACTACG
CGGAGCTAGCCGACGTACCGGTGTTCGTGTACCCGGGCACGAGCATGGATCTGGGTGACGTATGCGGTAGACCACACGTG
GTAGCTTCGATGGCGGTCCTGGACGACGGCGAGTCTGACCTCATCGCTACGGTCCGCAAGGCTATGGAGGAAGGGGCCGC
ACCGAGCTAA

Upstream 100 bases:

>100_bases
GTGCCGCGCGGGGTGAAACGTGAGCGGGGCGGAATGACTCATTGTGCACCATCGAGGGTAAGGGCTAGTTCTCATTCCGG
GGTGTTGTAACTTGGTGGAG

Downstream 100 bases:

>100_bases
AAGGGGTGAAAAACCTTGGCGGTTAAACTGGAAACCGAGCAGATCCGCATGATCGCGCTCTTCGAGAGCCTCACCGGGGC
ACACGTGCTGGACTGCGTGA

Product: ribosomal protein L30E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MQEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHV
VASMAVLDDGESDLIATVRKAMEEGAAPS

Sequences:

>Translated_109_residues
MQEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHV
VASMAVLDDGESDLIATVRKAMEEGAAPS
>Mature_109_residues
MQEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHV
VASMAVLDDGESDLIATVRKAMEEGAAPS

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=98, Percent_Identity=40.8163265306122, Blast_Score=94, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17508679, Length=97, Percent_Identity=45.360824742268, Blast_Score=86, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6321408, Length=97, Percent_Identity=32.9896907216495, Blast_Score=76, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17864264, Length=101, Percent_Identity=37.6237623762376, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24585096, Length=101, Percent_Identity=37.6237623762376, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_METKA (Q8TXJ0)

Other databases:

- EMBL:   AE009439
- RefSeq:   NP_613968.1
- ProteinModelPortal:   Q8TXJ0
- SMR:   Q8TXJ0
- GeneID:   1476784
- GenomeReviews:   AE009439_GR
- KEGG:   mka:MK0683
- NMPDR:   fig|190192.1.peg.681
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- BioCyc:   MKAN190192:MK0683-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 11732; Mature: 11732

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVP
CHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
VFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIATVRKAMEEGAAPS
EEEECCCCCCHHHHCCCCHHHEEEEEECCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVP
CHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
VFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDLIATVRKAMEEGAAPS
EEEECCCCCCHHHHCCCCHHHEEEEEECCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014