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The map label for this gene is 18978227

Identifier: 18978227

GI number: 18978227

Start: 1711817

End: 1713091

Strand: Direct

Name: 18978227

Synonym: PF1855

Alternate gene names: NA

Gene position: 1711817-1713091 (Clockwise)

Preceding gene: 18978225

Following gene: 18978228

Centisome position: 89.71

GC content: 38.75

Gene sequence:

>1275_bases
ATGCTCATCCACATAGGTATTGACGACACCGATTCACCAAATGGAATGTGCACTACATATATTGGGGCTATTCTATATAG
GGAAATTTCCAAGATAGCTGAGCCTCTAGACTTTCCAAGATTAATTAGGCTAAATCCAAATGTTCCTTACAAGACCAGGG
GAAATGGGGCCGTTGCAATGAGTTTTAAAATCGATGAAGAAAAGATAAAGGAAGTAAAGACACTTGTAATACGGTATGTA
AGGGAATTGGCCGATATAGATCACGAGAACACAAATCCAGGGATTGTTTTCTTAATTGGGGAAGTGCCAAAGGAATTAGA
AGAGTTTTCTCTAAGAGCATTAAGAGAGCACGTTACAATCGAAGAAGCAGAACATGTAGCTCGAAAAGTCAACGCAGAAG
TTTACAAATTCAAGCTCGGAAGAGGAATAATTGGGGGATTAGCAGCTATAGGCTATCCTCTAGAAAAGTTCACTTACGAA
TTACTTGCCTACAGGAAAAGAGAGTACTGGGGAACTCCAAGAAGAGTTATTAAGGAAAGTGTATTTTATGCAGACAAATG
GAGCTATCCGTTCACCTACGATAACGTTGACCCTTACAAGAGAACTGTCCTAATAACTCCTCATGGAAAAGACCCAGTTC
TTGTGGGGATAAGAGGAATTGATGTAGGAAAGATTCTTCAGGTCTTTGAGATGATTAAAATAGAAGAACCAATTGAATTC
TTCCAAGTTTACAAAACAAATCAAAATACCGACGATCATTTGGTTGTTAAGAAGATAAAAGATGTTAAGCCTTATGATAA
CGTTGTCATAAGGGGAAAAGTCGCTGGAAAATACTGGGAAAAAGGAAGACATGTATTTTTTGAACTTGAGGATGAAACAG
GGAAGATTAGAGTGGCAGCTTTTGAACCAACTAAAAAGTTTAGAAACTACGTGAGGAAACTCCTCCCAGGAGATGAGGTT
ATAATAGCTGGCGGAGTCAAAGAATTCGAAGGAGTATTAACCGTAAACCTGGAAAAATTTTACCCAGTAAATCTTGTTCC
CAAAGTGGAATATGAAAAGCCAAGATGTCCAAAGTGCGGAGGAACGATGAAGAGCAAGGGAGATTATCTAAAGTGTAAAA
AGTGCGGATATAAGATGGAAAAAATATTGACTCCAGTTAAGAGGCCAAGAGACTTAAAGAAGAAGATTTATGAAGTTCCT
CCAGATGCTCGGAAACATATTTCTCGCCCCTTAGTTCTCCCAGGAGGGGAAGATAAGATATTAGAGGCTCTATAA

Upstream 100 bases:

>100_bases
CAACTTCTACCATCTTAACTCCTTTTTCATCTACATGAGTTAGCTTCATCTTTAACCCCCTGGGATATTATTTTTAAGCA
TCCCTTAAGAGCCTTTATCG

Downstream 100 bases:

>100_bases
AAAGAAATGTTTTTATTTTTAACATGCAAAATAGGCAACCGTATGGTCAAATTAAGGACATTTATAAACATCTCAGAAGA
TCTCTTCGTAATCAGAAACT

Product: putative transcription-associated protein TFIIS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLIHIGIDDTDSPNGMCTTYIGAILYREISKIAEPLDFPRLIRLNPNVPYKTRGNGAVAMSFKIDEEKIKEVKTLVIRYV
RELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTIEEAEHVARKVNAEVYKFKLGRGIIGGLAAIGYPLEKFTYE
LLAYRKREYWGTPRRVIKESVFYADKWSYPFTYDNVDPYKRTVLITPHGKDPVLVGIRGIDVGKILQVFEMIKIEEPIEF
FQVYKTNQNTDDHLVVKKIKDVKPYDNVVIRGKVAGKYWEKGRHVFFELEDETGKIRVAAFEPTKKFRNYVRKLLPGDEV
IIAGGVKEFEGVLTVNLEKFYPVNLVPKVEYEKPRCPKCGGTMKSKGDYLKCKKCGYKMEKILTPVKRPRDLKKKIYEVP
PDARKHISRPLVLPGGEDKILEAL

Sequences:

>Translated_424_residues
MLIHIGIDDTDSPNGMCTTYIGAILYREISKIAEPLDFPRLIRLNPNVPYKTRGNGAVAMSFKIDEEKIKEVKTLVIRYV
RELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTIEEAEHVARKVNAEVYKFKLGRGIIGGLAAIGYPLEKFTYE
LLAYRKREYWGTPRRVIKESVFYADKWSYPFTYDNVDPYKRTVLITPHGKDPVLVGIRGIDVGKILQVFEMIKIEEPIEF
FQVYKTNQNTDDHLVVKKIKDVKPYDNVVIRGKVAGKYWEKGRHVFFELEDETGKIRVAAFEPTKKFRNYVRKLLPGDEV
IIAGGVKEFEGVLTVNLEKFYPVNLVPKVEYEKPRCPKCGGTMKSKGDYLKCKKCGYKMEKILTPVKRPRDLKKKIYEVP
PDARKHISRPLVLPGGEDKILEAL
>Mature_424_residues
MLIHIGIDDTDSPNGMCTTYIGAILYREISKIAEPLDFPRLIRLNPNVPYKTRGNGAVAMSFKIDEEKIKEVKTLVIRYV
RELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTIEEAEHVARKVNAEVYKFKLGRGIIGGLAAIGYPLEKFTYE
LLAYRKREYWGTPRRVIKESVFYADKWSYPFTYDNVDPYKRTVLITPHGKDPVLVGIRGIDVGKILQVFEMIKIEEPIEF
FQVYKTNQNTDDHLVVKKIKDVKPYDNVVIRGKVAGKYWEKGRHVFFELEDETGKIRVAAFEPTKKFRNYVRKLLPGDEV
IIAGGVKEFEGVLTVNLEKFYPVNLVPKVEYEKPRCPKCGGTMKSKGDYLKCKKCGYKMEKILTPVKRPRDLKKKIYEVP
PDARKHISRPLVLPGGEDKILEAL

Specific function: Unknown

COG id: COG1571

COG function: function code R; Predicted DNA-binding protein containing a Zn-ribbon domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013696
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF08489 DUF1743; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 48752; Mature: 48752

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIHIGIDDTDSPNGMCTTYIGAILYREISKIAEPLDFPRLIRLNPNVPYKTRGNGAVAM
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCEEEE
SFKIDEEKIKEVKTLVIRYVRELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTI
EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCH
EEAEHVARKVNAEVYKFKLGRGIIGGLAAIGYPLEKFTYELLAYRKREYWGTPRRVIKES
HHHHHHHHHHCCHHEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
VFYADKWSYPFTYDNVDPYKRTVLITPHGKDPVLVGIRGIDVGKILQVFEMIKIEEPIEF
HHEECCCCCCEECCCCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHH
FQVYKTNQNTDDHLVVKKIKDVKPYDNVVIRGKVAGKYWEKGRHVFFELEDETGKIRVAA
HHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCEEEEEEECCCCEEEEEE
FEPTKKFRNYVRKLLPGDEVIIAGGVKEFEGVLTVNLEKFYPVNLVPKVEYEKPRCPKCG
ECCHHHHHHHHHHHCCCCCEEEECCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
GTMKSKGDYLKCKKCGYKMEKILTPVKRPRDLKKKIYEVPPDARKHISRPLVLPGGEDKI
CCCCCCCCEEEHHHCCCHHHHHHCHHCCCHHHHHHHHCCCCHHHHHCCCCEECCCCCHHH
LEAL
HHCC
>Mature Secondary Structure
MLIHIGIDDTDSPNGMCTTYIGAILYREISKIAEPLDFPRLIRLNPNVPYKTRGNGAVAM
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCEEEE
SFKIDEEKIKEVKTLVIRYVRELADIDHENTNPGIVFLIGEVPKELEEFSLRALREHVTI
EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCH
EEAEHVARKVNAEVYKFKLGRGIIGGLAAIGYPLEKFTYELLAYRKREYWGTPRRVIKES
HHHHHHHHHHCCHHEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
VFYADKWSYPFTYDNVDPYKRTVLITPHGKDPVLVGIRGIDVGKILQVFEMIKIEEPIEF
HHEECCCCCCEECCCCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHH
FQVYKTNQNTDDHLVVKKIKDVKPYDNVVIRGKVAGKYWEKGRHVFFELEDETGKIRVAA
HHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCEEEEEEECCCCEEEEEE
FEPTKKFRNYVRKLLPGDEVIIAGGVKEFEGVLTVNLEKFYPVNLVPKVEYEKPRCPKCG
ECCHHHHHHHHHHHCCCCCEEEECCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
GTMKSKGDYLKCKKCGYKMEKILTPVKRPRDLKKKIYEVPPDARKHISRPLVLPGGEDKI
CCCCCCCCEEEHHHCCCHHHHHHCHHCCCHHHHHHHHCCCCHHHHHCCCCEECCCCCHHH
LEAL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]