Click here to switch to the map view.

The map label for this gene is 18976384

Identifier: 18976384

GI number: 18976384

Start: 11810

End: 12613

Strand: Direct

Name: 18976384

Synonym: PF0012

Alternate gene names: NA

Gene position: 11810-12613 (Clockwise)

Preceding gene: 161484715

Following gene: 18976388

Centisome position: 0.62

GC content: 39.93

Gene sequence:

>804_bases
ATGGAAATGACGAAAGCAATAGTAAAAGAAAATCCCAGGATTGAAGAGATAAAAGAGTTATTGGAAGTTGCAGAGAGTAG
GGAAGGGTTACTTACAATTTTTGCTAGGTGTACCGTTTATTATGAGGGAAGGGCCAAGAGTGAGCTTGGAGAAGGAGACA
GGATTATAATAATAAAGCCTGATGGAAGCTTCCTTATCCACCAGAAGAAGAAAAGGGAGCCTGTCAATTGGCAACCCCCT
GGGAGTAAAGTAAAAATGGAAGGAAACTCCTTAATTAGCATTAGAAGGAACCCAAAAGAAACACTCAAAGTTGATATAAT
TGAAGCATATGCAGCAGTTCTTTTCATGGCAGAGGACTATGAGGAGCTAACCCTAACTGGAAGTGAAGCAGAGATGGCTG
AGCTCATTTTCCAAAATCCCAATGTTATCGAGGAAGGATTTAAACCAATGTTTAGAGAGAAGCCAATAAAGCATGGAATA
GTTGATGTACTTGGCGTGGACAGAGAGGGAAATATAGTAGTTCTAGAACTGAAAAGGAGGAGGGCCGATTTACACGCGGT
TAGTCAGTTAAAGAGGTACGTAGATGCACTAAAAGAAGAACATGGAAATAAAGTAAGAGGAATATTGGTGGCACCTTCTC
TAACGGAAGGAGCTAAAAAGCTTTTAGAGAAACTTGGGCTAGAGTTTAGAAAGTTAGAACCTCCTAAAAAAGGTAAAAAG
AAAAGTTCAAAGCAAAAAACTCTAGACTTCCTCAACGATACTGTTAGGATAACTGGGGCATCACCTCCTGAAGCCATTCA
GTAA

Upstream 100 bases:

>100_bases
CTAATAAAATATTCCCACAGAAACTCCTTTACATCAACCACTGACTTCACCACTATCTAACACCACAGCTTAATTTTTAA
CCTTTCTATCCGAGGATAAC

Downstream 100 bases:

>100_bases
CATCACCAGGCGGATCACCAAAACTAGAATGAATTCTGACAAAATTATACCAGAAGGCAAACAGAAAAACAAACCTATGA
ACCCTCCTCCAGTCTTTACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MEMTKAIVKENPRIEEIKELLEVAESREGLLTIFARCTVYYEGRAKSELGEGDRIIIIKPDGSFLIHQKKKREPVNWQPP
GSKVKMEGNSLISIRRNPKETLKVDIIEAYAAVLFMAEDYEELTLTGSEAEMAELIFQNPNVIEEGFKPMFREKPIKHGI
VDVLGVDREGNIVVLELKRRRADLHAVSQLKRYVDALKEEHGNKVRGILVAPSLTEGAKKLLEKLGLEFRKLEPPKKGKK
KSSKQKTLDFLNDTVRITGASPPEAIQ

Sequences:

>Translated_267_residues
MEMTKAIVKENPRIEEIKELLEVAESREGLLTIFARCTVYYEGRAKSELGEGDRIIIIKPDGSFLIHQKKKREPVNWQPP
GSKVKMEGNSLISIRRNPKETLKVDIIEAYAAVLFMAEDYEELTLTGSEAEMAELIFQNPNVIEEGFKPMFREKPIKHGI
VDVLGVDREGNIVVLELKRRRADLHAVSQLKRYVDALKEEHGNKVRGILVAPSLTEGAKKLLEKLGLEFRKLEPPKKGKK
KSSKQKTLDFLNDTVRITGASPPEAIQ
>Mature_267_residues
MEMTKAIVKENPRIEEIKELLEVAESREGLLTIFARCTVYYEGRAKSELGEGDRIIIIKPDGSFLIHQKKKREPVNWQPP
GSKVKMEGNSLISIRRNPKETLKVDIIEAYAAVLFMAEDYEELTLTGSEAEMAELIFQNPNVIEEGFKPMFREKPIKHGI
VDVLGVDREGNIVVLELKRRRADLHAVSQLKRYVDALKEEHGNKVRGILVAPSLTEGAKKLLEKLGLEFRKLEPPKKGKK
KSSKQKTLDFLNDTVRITGASPPEAIQ

Specific function: Unknown

COG id: COG1637

COG function: function code L; Predicted nuclease of the RecB family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0286 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y012_PYRFU (Q8U4R1)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_577741.1
- ProteinModelPortal:   Q8U4R1
- EnsemblBacteria:   EBPYRT00000005689
- GeneID:   1467840
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF0012
- GeneTree:   EBGT00050000022525
- HOGENOM:   HBG539024
- OMA:   VDYVGRL
- ProtClustDB:   PRK04247
- HAMAP:   MF_00722
- InterPro:   IPR002793

Pfam domain/function: PF01939 DUF91

EC number: NA

Molecular weight: Translated: 30212; Mature: 30212

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMTKAIVKENPRIEEIKELLEVAESREGLLTIFARCTVYYEGRAKSELGEGDRIIIIKP
CCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEEHHEEEECCCCHHCCCCCCEEEEECC
DGSFLIHQKKKREPVNWQPPGSKVKMEGNSLISIRRNPKETLKVDIIEAYAAVLFMAEDY
CCCEEEEEHHCCCCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
EELTLTGSEAEMAELIFQNPNVIEEGFKPMFREKPIKHGIVDVLGVDREGNIVVLELKRR
CCEEEECCHHHHHHHHHCCCCHHHHHCHHHHHCCCHHCCCHHHEECCCCCCEEEEEEHHH
RADLHAVSQLKRYVDALKEEHGNKVRGILVAPSLTEGAKKLLEKLGLEFRKLEPPKKGKK
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHCCCCCCCCH
KSSKQKTLDFLNDTVRITGASPPEAIQ
HHHHHHHHHHHCCEEEEECCCCCCCCC
>Mature Secondary Structure
MEMTKAIVKENPRIEEIKELLEVAESREGLLTIFARCTVYYEGRAKSELGEGDRIIIIKP
CCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEEHHEEEECCCCHHCCCCCCEEEEECC
DGSFLIHQKKKREPVNWQPPGSKVKMEGNSLISIRRNPKETLKVDIIEAYAAVLFMAEDY
CCCEEEEEHHCCCCCCCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
EELTLTGSEAEMAELIFQNPNVIEEGFKPMFREKPIKHGIVDVLGVDREGNIVVLELKRR
CCEEEECCHHHHHHHHHCCCCHHHHHCHHHHHCCCHHCCCHHHEECCCCCCEEEEEEHHH
RADLHAVSQLKRYVDALKEEHGNKVRGILVAPSLTEGAKKLLEKLGLEFRKLEPPKKGKK
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHCCCCCCCCH
KSSKQKTLDFLNDTVRITGASPPEAIQ
HHHHHHHHHHHCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA