| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311545
Identifier: 18311545
GI number: 18311545
Start: 2935657
End: 2937393
Strand: Reverse
Name: 18311545
Synonym: CPE2563
Alternate gene names: NA
Gene position: 2937393-2935657 (Counterclockwise)
Preceding gene: 18311546
Following gene: 18311544
Centisome position: 96.9
GC content: 32.01
Gene sequence:
>1737_bases GTGGAGTCAACTGAGAGAAAAAACTTCTATAATGATAAAAATTATATAAGCTTTGTTGTGGCTTATGATGGAAATATTAA AAAAGAAATTGATGATATAAATGATGCTAGTATCTTTTTTATTGATGACAATTTTGCAATCTTATCTATAAAATTACAAA ACTATATGGAAACTATAAGAAGTATAAAAAGTATAATTTATATAGAGTTAAATGGAATATATACCCTAGGTGAAAGTCCT GTAGAAGATTCAAAGGCTCCAATATTTCATAGGAATCCATCTTTAAATCTTAGAGGAAGTGGAGTTGTTGTTGCCATAGT TGATACTGGAATAGATTATTTAAATAATGAATTCATGAGAGAAGATGAAACTACTAGAATATTAAGGATTTGGGATCAAA CAATAGATAGTGGGAAGACTCCTGATGGATTTATTAGTGGAAGCGAGTATACAGAAGAAGATATAAATAAAGCTATACAA GCTCAAAAACAAGGGCAGAATCCATATGATATTGTTCCTTCAAAAGATGATTATGGCCATGGAACTAAGATGGCAGGGAT AGTTGGAGCTAGAGGGATTAATAGAGAAATAGTAGGAGTAGCTCCAGATTGTGAGTTTATAATCATAAAATTACAGGAAG CATCTAAAGAATATGTAGATTTTTATTATGCTAAAGGAGATAAGGCTAAATATAGAAATACAGATATAATAATGGCTCTT AAATATTTATATGAATTATCATTTACCTTAAATAAACCAATGATAATATACTTACCTTTAGGAAGCAACTTAGGAGATCA TGCAGGTGCAAGCATATTAGAACGATATGTTGATACTAAAATCTCGGGGAGAAACTCCTTATTTGTAGTTACGTCTACAG GAAATCAAGGAAATACAGATACACATACTTCAGGGGAGATAAAGAGTAATGGTGATAGTCAGATAATAGAACTTAATTGT GGGAAAGAGCAAAAAGGATTGGTTTTACAAATATATGCTCAAAGGCCTAGTAAAATAAAGTTAGGCATATTATCTCCTTC TGGGGAGAGATTTGAAAATACTAATCCTAGAAAGACAAAGCATATATTAATAAATGATGCACCAATTTGGAAATTTATTT ATGAAGGAACTACAGTACAAGTTACTTATGACTCCCCAGATGAATTTACTGGAGATGATAAGTTTGTAATAAAGATTGAG GGAATCACAGAGGGGGTTTGGAGGTTTATATTAACTAGTAACAATATAGTTGATGGTAAATATTATGCTTGGATTCTTCA AAGAGAATTATTAGATGAGGATACAAGATTTTTGAATCCTTCTCCTTATACAACATTAACTATACCAGGAACTGCAAAGA CTATTATTAATACTTCATACTACAATCAAAATAATGGGGCTATAGTATCAGAATCTGGAAGAGGATATACAATGAAAGAT TATATACAGCCTATAATAACAGCTGGGGGCATAAATGCCATAACAACTAAACCTGGTGGAGGGACTATAACCATGTCTGG GGCAAGTGTTGCTGGGGCAATTTTAGCAGGGTGCTGTGCTTTAATAATCCAATGGGCCGTTGTAGATGGAAATGATCCTC AAATGTATGCAACTAAATTACAAGCTTATATTATTAGAGGAGCTAGGAAAAGAGAAGGAGATACTTATCCAAATAGACAG TGGGGATATGGAATTTTGGACATGCAAGAAATATTTAAGAGTTTAACGAATAAGTAA
Upstream 100 bases:
>100_bases TTTTTATATTTAAATACTTTTTATGTTGGTTATCAAAAAGAAGAAATTCTGAATAAAATAGCTATAAGAAAATAAAGTAA GTAAGAAGGAAGTGGATTTA
Downstream 100 bases:
>100_bases ATAAGGAGTATAAGTATGGAGAATAAAGCTAAGGTTGGCATAGATTTTATAAATACAATACCCAAGCAAATACTAACTAG CTTAATAGAACAATATTCCC
Product: Ser-type protease
Products: NA
Alternate protein names: Peptidase S8 And S; Subtilase Family Protein; Peptidase S8/S53 Subtilisin Kexin Sedolisin; Subtilisin Like Protease; Ser-Type Protease; Germination-Specific Protease; Subtilase; Serine-Type Protease; Spore-Cortex-Lytic; Protease CspB; DNA/RNA Non-Specific Endonuclease; Subtilisin-Like Protease
Number of amino acids: Translated: 578; Mature: 578
Protein sequence:
>578_residues MESTERKNFYNDKNYISFVVAYDGNIKKEIDDINDASIFFIDDNFAILSIKLQNYMETIRSIKSIIYIELNGIYTLGESP VEDSKAPIFHRNPSLNLRGSGVVVAIVDTGIDYLNNEFMREDETTRILRIWDQTIDSGKTPDGFISGSEYTEEDINKAIQ AQKQGQNPYDIVPSKDDYGHGTKMAGIVGARGINREIVGVAPDCEFIIIKLQEASKEYVDFYYAKGDKAKYRNTDIIMAL KYLYELSFTLNKPMIIYLPLGSNLGDHAGASILERYVDTKISGRNSLFVVTSTGNQGNTDTHTSGEIKSNGDSQIIELNC GKEQKGLVLQIYAQRPSKIKLGILSPSGERFENTNPRKTKHILINDAPIWKFIYEGTTVQVTYDSPDEFTGDDKFVIKIE GITEGVWRFILTSNNIVDGKYYAWILQRELLDEDTRFLNPSPYTTLTIPGTAKTIINTSYYNQNNGAIVSESGRGYTMKD YIQPIITAGGINAITTKPGGGTITMSGASVAGAILAGCCALIIQWAVVDGNDPQMYATKLQAYIIRGARKREGDTYPNRQ WGYGILDMQEIFKSLTNK
Sequences:
>Translated_578_residues MESTERKNFYNDKNYISFVVAYDGNIKKEIDDINDASIFFIDDNFAILSIKLQNYMETIRSIKSIIYIELNGIYTLGESP VEDSKAPIFHRNPSLNLRGSGVVVAIVDTGIDYLNNEFMREDETTRILRIWDQTIDSGKTPDGFISGSEYTEEDINKAIQ AQKQGQNPYDIVPSKDDYGHGTKMAGIVGARGINREIVGVAPDCEFIIIKLQEASKEYVDFYYAKGDKAKYRNTDIIMAL KYLYELSFTLNKPMIIYLPLGSNLGDHAGASILERYVDTKISGRNSLFVVTSTGNQGNTDTHTSGEIKSNGDSQIIELNC GKEQKGLVLQIYAQRPSKIKLGILSPSGERFENTNPRKTKHILINDAPIWKFIYEGTTVQVTYDSPDEFTGDDKFVIKIE GITEGVWRFILTSNNIVDGKYYAWILQRELLDEDTRFLNPSPYTTLTIPGTAKTIINTSYYNQNNGAIVSESGRGYTMKD YIQPIITAGGINAITTKPGGGTITMSGASVAGAILAGCCALIIQWAVVDGNDPQMYATKLQAYIIRGARKREGDTYPNRQ WGYGILDMQEIFKSLTNK >Mature_578_residues MESTERKNFYNDKNYISFVVAYDGNIKKEIDDINDASIFFIDDNFAILSIKLQNYMETIRSIKSIIYIELNGIYTLGESP VEDSKAPIFHRNPSLNLRGSGVVVAIVDTGIDYLNNEFMREDETTRILRIWDQTIDSGKTPDGFISGSEYTEEDINKAIQ AQKQGQNPYDIVPSKDDYGHGTKMAGIVGARGINREIVGVAPDCEFIIIKLQEASKEYVDFYYAKGDKAKYRNTDIIMAL KYLYELSFTLNKPMIIYLPLGSNLGDHAGASILERYVDTKISGRNSLFVVTSTGNQGNTDTHTSGEIKSNGDSQIIELNC GKEQKGLVLQIYAQRPSKIKLGILSPSGERFENTNPRKTKHILINDAPIWKFIYEGTTVQVTYDSPDEFTGDDKFVIKIE GITEGVWRFILTSNNIVDGKYYAWILQRELLDEDTRFLNPSPYTTLTIPGTAKTIINTSYYNQNNGAIVSESGRGYTMKD YIQPIITAGGINAITTKPGGGTITMSGASVAGAILAGCCALIIQWAVVDGNDPQMYATKLQAYIIRGARKREGDTYPNRQ WGYGILDMQEIFKSLTNK
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64541; Mature: 64541
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESTERKNFYNDKNYISFVVAYDGNIKKEIDDINDASIFFIDDNFAILSIKLQNYMETIR CCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCEEEEEECCEEEEEEEHHHHHHHHH SIKSIIYIELNGIYTLGESPVEDSKAPIFHRNPSLNLRGSGVVVAIVDTGIDYLNNEFMR HHHEEEEEEECCEEEECCCCCCCCCCCEEECCCCCEECCCCEEEEEEECCCHHHCHHHHC EDETTRILRIWDQTIDSGKTPDGFISGSEYTEEDINKAIQAQKQGQNPYDIVPSKDDYGH CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC GTKMAGIVGARGINREIVGVAPDCEFIIIKLQEASKEYVDFYYAKGDKAKYRNTDIIMAL CCEEEHEEECCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHH KYLYELSFTLNKPMIIYLPLGSNLGDHAGASILERYVDTKISGRNSLFVVTSTGNQGNTD HHHHHHHEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCEECCCCEEEEEECCCCCCCCC THTSGEIKSNGDSQIIELNCGKEQKGLVLQIYAQRPSKIKLGILSPSGERFENTNPRKTK CCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEE HILINDAPIWKFIYEGTTVQVTYDSPDEFTGDDKFVIKIEGITEGVWRFILTSNNIVDGK EEEEECCCEEEEEECCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEECCH YYAWILQRELLDEDTRFLNPSPYTTLTIPGTAKTIINTSYYNQNNGAIVSESGRGYTMKD HEEEEHHHHHHCCCHHCCCCCCCEEEEECCCCEEEEEEEEEECCCCEEEECCCCCCCHHH YIQPIITAGGINAITTKPGGGTITMSGASVAGAILAGCCALIIQWAVVDGNDPQMYATKL HHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHH QAYIIRGARKREGDTYPNRQWGYGILDMQEIFKSLTNK HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MESTERKNFYNDKNYISFVVAYDGNIKKEIDDINDASIFFIDDNFAILSIKLQNYMETIR CCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCCEEEEEECCEEEEEEEHHHHHHHHH SIKSIIYIELNGIYTLGESPVEDSKAPIFHRNPSLNLRGSGVVVAIVDTGIDYLNNEFMR HHHEEEEEEECCEEEECCCCCCCCCCCEEECCCCCEECCCCEEEEEEECCCHHHCHHHHC EDETTRILRIWDQTIDSGKTPDGFISGSEYTEEDINKAIQAQKQGQNPYDIVPSKDDYGH CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC GTKMAGIVGARGINREIVGVAPDCEFIIIKLQEASKEYVDFYYAKGDKAKYRNTDIIMAL CCEEEHEEECCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHH KYLYELSFTLNKPMIIYLPLGSNLGDHAGASILERYVDTKISGRNSLFVVTSTGNQGNTD HHHHHHHEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCEECCCCEEEEEECCCCCCCCC THTSGEIKSNGDSQIIELNCGKEQKGLVLQIYAQRPSKIKLGILSPSGERFENTNPRKTK CCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEE HILINDAPIWKFIYEGTTVQVTYDSPDEFTGDDKFVIKIEGITEGVWRFILTSNNIVDGK EEEEECCCEEEEEECCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEECCH YYAWILQRELLDEDTRFLNPSPYTTLTIPGTAKTIINTSYYNQNNGAIVSESGRGYTMKD HEEEEHHHHHHCCCHHCCCCCCCEEEEECCCCEEEEEEEEEECCCCEEEECCCCCCCHHH YIQPIITAGGINAITTKPGGGTITMSGASVAGAILAGCCALIIQWAVVDGNDPQMYATKL HHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHH QAYIIRGARKREGDTYPNRQWGYGILDMQEIFKSLTNK HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA