| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311546
Identifier: 18311546
GI number: 18311546
Start: 2937534
End: 2938205
Strand: Reverse
Name: 18311546
Synonym: CPE2564
Alternate gene names: NA
Gene position: 2938205-2937534 (Counterclockwise)
Preceding gene: 18311547
Following gene: 18311545
Centisome position: 96.92
GC content: 27.98
Gene sequence:
>672_bases ATGAGTAGAGTTGGGGAAAGAATAAAAGAGGCTAGAGAAAAAAGTGGAATGACACAAAAAGCTTTAGCTAAAAAGCTAGG TGTAGCTGAGAAGTTTGTAAATGAAGTTGAAACAGGAAGAAAAATTATAAATGAATCACTTATATCAAAGGTATCAAAGG TTTTAAATACTGATTTAAATGATATAAATATGGTTGTTACTGATGAGGAACTTCAAAAAGAACTTAAAGCTGAAAAACAA GTAAGACAAACAAAACCAGCAGAGGTTAATGAAGTTTGGAATCAAGCTTTTGGATCAGTTTTAAAAAATGTTCCAATATA TGATTATTCATTAGCTCAGGTTAAGGGATATAAACAACTTGCTACTGCTTCAAATAAAATAGATGGTCATACAGCAAACA AAGTTTTTTATTTAAAAATAGAAAATAATGATATGACTGGCTATAGAATTCAAGAAAATGATTTAGCCTTATGCTATTCA ATAAAAGAGATAGAAAATAATTCTATTTGTTTAGTTGAATTCAATGGAAAGAGAGTTATTAGACAAATTAAAAAGCTAGA TAATGTTAAGGCTTTATTAATAAGCAATAATGGTAGCATGAGAACAGAGACAGCTAACATAAAAGAAATTAAGGCAATTG CTAAGCTTTATAGAATAGAATTTGATTTATAA
Upstream 100 bases:
>100_bases AGTTACAGAAACCTCTAAAGAATGGCAATTTAACTACCTTGTTGAACATTTGATTGAAGAAAGAGAATGGTATAGAAGTA TGCAAGGAGGAAAAGCTTAA
Downstream 100 bases:
>100_bases ATTTAAATACAGAAAGGACAGTTCTAGATTAGAACTGTCCTTTTTATATTTAAATACTTTTTATGTTGGTTATCAAAAAG AAGAAATTCTGAATAAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; LacI/Xre Family Transcriptional Regulator; LacI Family Transcription Regulator; Plasmid Maintenance System Antidote Protein XRE Family
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MSRVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLNDINMVVTDEELQKELKAEKQ VRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQLATASNKIDGHTANKVFYLKIENNDMTGYRIQENDLALCYS IKEIENNSICLVEFNGKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAKLYRIEFDL
Sequences:
>Translated_223_residues MSRVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLNDINMVVTDEELQKELKAEKQ VRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQLATASNKIDGHTANKVFYLKIENNDMTGYRIQENDLALCYS IKEIENNSICLVEFNGKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAKLYRIEFDL >Mature_222_residues SRVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLNDINMVVTDEELQKELKAEKQV RQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQLATASNKIDGHTANKVFYLKIENNDMTGYRIQENDLALCYSI KEIENNSICLVEFNGKRVIRQIKKLDNVKALLISNNGSMRTETANIKEIKAIAKLYRIEFDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25330; Mature: 25198
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL CCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ATASNKIDGHTANKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFNGKRVI HHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCEEEEEEHHHCCCCCEEEEEECCHHHH RQIKKLDNVKALLISNNGSMRTETANIKEIKAIAKLYRIEFDL HHHHHHCCCEEEEEECCCCCEECCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRVGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDLN CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DINMVVTDEELQKELKAEKQVRQTKPAEVNEVWNQAFGSVLKNVPIYDYSLAQVKGYKQL CCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ATASNKIDGHTANKVFYLKIENNDMTGYRIQENDLALCYSIKEIENNSICLVEFNGKRVI HHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCEEEEEEHHHCCCCCEEEEEECCHHHH RQIKKLDNVKALLISNNGSMRTETANIKEIKAIAKLYRIEFDL HHHHHHCCCEEEEEECCCCCEECCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA