| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311544
Identifier: 18311544
GI number: 18311544
Start: 2933944
End: 2935641
Strand: Reverse
Name: 18311544
Synonym: CPE2562
Alternate gene names: NA
Gene position: 2935641-2933944 (Counterclockwise)
Preceding gene: 18311545
Following gene: 18311543
Centisome position: 96.84
GC content: 31.27
Gene sequence:
>1698_bases ATGGAGAATAAAGCTAAGGTTGGCATAGATTTTATAAATACAATACCCAAGCAAATACTAACTAGCTTAATAGAACAATA TTCCCCTAATAATGGAGAGATAGAGTTAGTTGTTTTATATGGAGATAATTTTTTAAGATTTAAAAATTCAGTAGATGCCA TAGGTGCTAAAGTTGAAGATTTAGGATATGGATTTGGAATACTTATAATAAAGGTTAATGACTTAAATAGGATAATTGAG CTTGAAGGTCTTCAATATATAGAGCTACCAAAAATTTTATATACATCAGCTTATGATAGTAATAGAGCATCCTGTATTCC ATCGGTATGGAATAATTATAATTTAACTGGTGAAGGAATATTAGTTGGTTTTTTAGATACTGGAATAGACTACACTCATA ATGCTTTTAAAGATGATGAGGGCAATACCAGGATAGAGTATATATATGATCTTGAAAATGGAGTTGTATATGATAAAAAT AAAATAAATGAAGCTTTAAAATCTGAAGATCCATTTAGCATTGTACCTGAAATTGATTTATCAGGTCATGGAACTCATGT TGCAGGAATTGCATGTGCCGGAGGAAATATAAACTTTGATAATTATGGAGTTGCATATAAAAGTAGCATAGCAATGGTAA AGATAACTGGTGAGAATAGTTTAAGGGCGGCCTTAAGTACACAGCTTATGAGAGGGTTAAAATTTTTAATGGATAAAAGT AATGAGATTAATAAACCTTTAGTTGTAAATATAAGTTTAAGTACAAATGATGGTTCTCATAATGGAAGTAGTTTACTAGA AAAGTATATTCAAACTTTTACTCAATTACAAAAGGCAGTTATTGTAGTAGCTGCTGGGAATGAAGGTAATAGTGCTCATC ATGTAGGGGGCAAGATGAAAAAAGAAGAAGATTTAGACTTAAATATAGGAGATGGAGAAAAAGGTATTATATTAGATTTT TTCAAGCCTGTATTAGTTGATGTATCAGTTGAAGTAATTTCACCAACTGGAATAAGTACAGGACCAATGGGATTATCTGA GTCTTATAAAGAAAGATTTGTTGGAAGAGAAAAAATAGTTGTATATAGTACTGGTCCTAAGCCTTTTGATATACAAGGAC AAACTACCATAAGTATTTTGCCCTTAGGAGATACAATAACTTCTGGTGGATGGAGAATTATAGTTAGAAAATTAAATAAT TATGATGGATATTTTGATGTTTGGTTACCTATAGCAGAAGGATTAAATGAAAGAACAAGATTTTTACAACCATCTGTTTA TAATACCTTAGGAATCCCTGCAACTGTAGAAGGGGTTATCTCCGTTGGAAGTTATAATTTTTTAAACAATAATTTATCAG CTTTTTCTGGACGAGGAGTTGTTAGACCAGAATGGTTAATAAAACCAGATTTAGTTGCTCCAGGTGAAAACATATTATCC ACTGTTGAGGAGCAAGGATTTGATACTAAAAGTGGTACATCAATGGCTGCGCCACAAGTTTCTGGAATATGTGCTCTTCT TTTTGAATGGGGGATTATAAGAAATAATGATCCTTTTTTATATGGAGAAAGAATTAAATATTATTTGATTAAAGGAGCAA AGAGGACGATCTTTGGTGAGGCATATCCAAATCCAGACTTGGGATATGGATTTGTATGTTTAGATAGAACAATGGAATTA TTAATTAATAGGAGATAG
Upstream 100 bases:
>100_bases AGAAGGAGATACTTATCCAAATAGACAGTGGGGATATGGAATTTTGGACATGCAAGAAATATTTAAGAGTTTAACGAATA AGTAAATAAGGAGTATAAGT
Downstream 100 bases:
>100_bases TTATGGAAACTGTATCTAATAAAGCGAATCTATTAGTTGACCCTGAAAGCATGAATTTTCTTGTTGAATATAGAGGGGAT ATAGAGAATGAAGTTAAGGA
Product: protease CspB
Products: NA
Alternate protein names: Subtilase Family Protein; Subtilisin Like Protease; Peptidase S8/S53 Subtilisin Kexin Sedolisin; Peptidase S8 And S; Ser-Type Protease; Germination-Specific Protease; Subtilase; Serine-Type Protease; Spore-Cortex-Lytic; Protease CspB; Subtilase Family Domain Protein; DNA/RNA Non-Specific Endonuclease; Subtilisin-Like Protease; Extracellular Serine Protease
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVEDLGYGFGILIIKVNDLNRIIE LEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGILVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKN KINEALKSEDPFSIVPEIDLSGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMKKEEDLDLNIGDGEKGIILDF FKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIVVYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNN YDGYFDVWLPIAEGLNERTRFLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGEAYPNPDLGYGFVCLDRTMEL LINRR
Sequences:
>Translated_565_residues MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVEDLGYGFGILIIKVNDLNRIIE LEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGILVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKN KINEALKSEDPFSIVPEIDLSGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMKKEEDLDLNIGDGEKGIILDF FKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIVVYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNN YDGYFDVWLPIAEGLNERTRFLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGEAYPNPDLGYGFVCLDRTMEL LINRR >Mature_565_residues MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVEDLGYGFGILIIKVNDLNRIIE LEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGILVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKN KINEALKSEDPFSIVPEIDLSGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMKKEEDLDLNIGDGEKGIILDF FKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIVVYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNN YDGYFDVWLPIAEGLNERTRFLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGEAYPNPDLGYGFVCLDRTMEL LINRR
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62218; Mature: 62218
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00136 SUBTILASE_ASP ; PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVED CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCHHHHCCCHHH LGYGFGILIIKVNDLNRIIELEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGI CCCCEEEEEEEECCCCEEEEECCCCEEECCCEEEECCCCCCCCCCCHHHHCCCCCCCCEE LVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKNKINEALKSEDPFSIVPEIDL EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECHHHHHHHHCCCCCCEEEECCCC SGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS CCCCCEEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMK CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCC KEEDLDLNIGDGEKGIILDFFKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIV CCCCCEEEECCCCCCEEHHHHCHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEE VYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNNYDGYFDVWLPIAEGLNERTR EEECCCCCEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEHHCCCCHHHH FLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS HCCCCHHHHCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGE HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCEEEECCEEEEEEECCCEEEEEC AYPNPDLGYGFVCLDRTMELLINRR CCCCCCCCCEEEEHHHHHHHHHCCC >Mature Secondary Structure MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVED CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCHHHHCCCHHH LGYGFGILIIKVNDLNRIIELEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGI CCCCEEEEEEEECCCCEEEEECCCCEEECCCEEEECCCCCCCCCCCHHHHCCCCCCCCEE LVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKNKINEALKSEDPFSIVPEIDL EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECHHHHHHHHCCCCCCEEEECCCC SGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS CCCCCEEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMK CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCC KEEDLDLNIGDGEKGIILDFFKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIV CCCCCEEEECCCCCCEEHHHHCHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEE VYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNNYDGYFDVWLPIAEGLNERTR EEECCCCCEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEHHCCCCHHHH FLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS HCCCCHHHHCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGE HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCEEEECCEEEEEEECCCEEEEEC AYPNPDLGYGFVCLDRTMELLINRR CCCCCCCCCEEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA