Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18311544

Identifier: 18311544

GI number: 18311544

Start: 2933944

End: 2935641

Strand: Reverse

Name: 18311544

Synonym: CPE2562

Alternate gene names: NA

Gene position: 2935641-2933944 (Counterclockwise)

Preceding gene: 18311545

Following gene: 18311543

Centisome position: 96.84

GC content: 31.27

Gene sequence:

>1698_bases
ATGGAGAATAAAGCTAAGGTTGGCATAGATTTTATAAATACAATACCCAAGCAAATACTAACTAGCTTAATAGAACAATA
TTCCCCTAATAATGGAGAGATAGAGTTAGTTGTTTTATATGGAGATAATTTTTTAAGATTTAAAAATTCAGTAGATGCCA
TAGGTGCTAAAGTTGAAGATTTAGGATATGGATTTGGAATACTTATAATAAAGGTTAATGACTTAAATAGGATAATTGAG
CTTGAAGGTCTTCAATATATAGAGCTACCAAAAATTTTATATACATCAGCTTATGATAGTAATAGAGCATCCTGTATTCC
ATCGGTATGGAATAATTATAATTTAACTGGTGAAGGAATATTAGTTGGTTTTTTAGATACTGGAATAGACTACACTCATA
ATGCTTTTAAAGATGATGAGGGCAATACCAGGATAGAGTATATATATGATCTTGAAAATGGAGTTGTATATGATAAAAAT
AAAATAAATGAAGCTTTAAAATCTGAAGATCCATTTAGCATTGTACCTGAAATTGATTTATCAGGTCATGGAACTCATGT
TGCAGGAATTGCATGTGCCGGAGGAAATATAAACTTTGATAATTATGGAGTTGCATATAAAAGTAGCATAGCAATGGTAA
AGATAACTGGTGAGAATAGTTTAAGGGCGGCCTTAAGTACACAGCTTATGAGAGGGTTAAAATTTTTAATGGATAAAAGT
AATGAGATTAATAAACCTTTAGTTGTAAATATAAGTTTAAGTACAAATGATGGTTCTCATAATGGAAGTAGTTTACTAGA
AAAGTATATTCAAACTTTTACTCAATTACAAAAGGCAGTTATTGTAGTAGCTGCTGGGAATGAAGGTAATAGTGCTCATC
ATGTAGGGGGCAAGATGAAAAAAGAAGAAGATTTAGACTTAAATATAGGAGATGGAGAAAAAGGTATTATATTAGATTTT
TTCAAGCCTGTATTAGTTGATGTATCAGTTGAAGTAATTTCACCAACTGGAATAAGTACAGGACCAATGGGATTATCTGA
GTCTTATAAAGAAAGATTTGTTGGAAGAGAAAAAATAGTTGTATATAGTACTGGTCCTAAGCCTTTTGATATACAAGGAC
AAACTACCATAAGTATTTTGCCCTTAGGAGATACAATAACTTCTGGTGGATGGAGAATTATAGTTAGAAAATTAAATAAT
TATGATGGATATTTTGATGTTTGGTTACCTATAGCAGAAGGATTAAATGAAAGAACAAGATTTTTACAACCATCTGTTTA
TAATACCTTAGGAATCCCTGCAACTGTAGAAGGGGTTATCTCCGTTGGAAGTTATAATTTTTTAAACAATAATTTATCAG
CTTTTTCTGGACGAGGAGTTGTTAGACCAGAATGGTTAATAAAACCAGATTTAGTTGCTCCAGGTGAAAACATATTATCC
ACTGTTGAGGAGCAAGGATTTGATACTAAAAGTGGTACATCAATGGCTGCGCCACAAGTTTCTGGAATATGTGCTCTTCT
TTTTGAATGGGGGATTATAAGAAATAATGATCCTTTTTTATATGGAGAAAGAATTAAATATTATTTGATTAAAGGAGCAA
AGAGGACGATCTTTGGTGAGGCATATCCAAATCCAGACTTGGGATATGGATTTGTATGTTTAGATAGAACAATGGAATTA
TTAATTAATAGGAGATAG

Upstream 100 bases:

>100_bases
AGAAGGAGATACTTATCCAAATAGACAGTGGGGATATGGAATTTTGGACATGCAAGAAATATTTAAGAGTTTAACGAATA
AGTAAATAAGGAGTATAAGT

Downstream 100 bases:

>100_bases
TTATGGAAACTGTATCTAATAAAGCGAATCTATTAGTTGACCCTGAAAGCATGAATTTTCTTGTTGAATATAGAGGGGAT
ATAGAGAATGAAGTTAAGGA

Product: protease CspB

Products: NA

Alternate protein names: Subtilase Family Protein; Subtilisin Like Protease; Peptidase S8/S53 Subtilisin Kexin Sedolisin; Peptidase S8 And S; Ser-Type Protease; Germination-Specific Protease; Subtilase; Serine-Type Protease; Spore-Cortex-Lytic; Protease CspB; Subtilase Family Domain Protein; DNA/RNA Non-Specific Endonuclease; Subtilisin-Like Protease; Extracellular Serine Protease

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVEDLGYGFGILIIKVNDLNRIIE
LEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGILVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKN
KINEALKSEDPFSIVPEIDLSGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS
NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMKKEEDLDLNIGDGEKGIILDF
FKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIVVYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNN
YDGYFDVWLPIAEGLNERTRFLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS
TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGEAYPNPDLGYGFVCLDRTMEL
LINRR

Sequences:

>Translated_565_residues
MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVEDLGYGFGILIIKVNDLNRIIE
LEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGILVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKN
KINEALKSEDPFSIVPEIDLSGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS
NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMKKEEDLDLNIGDGEKGIILDF
FKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIVVYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNN
YDGYFDVWLPIAEGLNERTRFLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS
TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGEAYPNPDLGYGFVCLDRTMEL
LINRR
>Mature_565_residues
MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVEDLGYGFGILIIKVNDLNRIIE
LEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGILVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKN
KINEALKSEDPFSIVPEIDLSGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS
NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMKKEEDLDLNIGDGEKGIILDF
FKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIVVYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNN
YDGYFDVWLPIAEGLNERTRFLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS
TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGEAYPNPDLGYGFVCLDRTMEL
LINRR

Specific function: Unknown

COG id: COG1404

COG function: function code O; Subtilisin-like serine proteases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62218; Mature: 62218

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00136 SUBTILASE_ASP ; PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVED
CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCHHHHCCCHHH
LGYGFGILIIKVNDLNRIIELEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGI
CCCCEEEEEEEECCCCEEEEECCCCEEECCCEEEECCCCCCCCCCCHHHHCCCCCCCCEE
LVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKNKINEALKSEDPFSIVPEIDL
EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECHHHHHHHHCCCCCCEEEECCCC
SGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS
CCCCCEEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMK
CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCC
KEEDLDLNIGDGEKGIILDFFKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIV
CCCCCEEEECCCCCCEEHHHHCHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEE
VYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNNYDGYFDVWLPIAEGLNERTR
EEECCCCCEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEHHCCCCHHHH
FLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS
HCCCCHHHHCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH
TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGE
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCEEEECCEEEEEEECCCEEEEEC
AYPNPDLGYGFVCLDRTMELLINRR
CCCCCCCCCEEEEHHHHHHHHHCCC
>Mature Secondary Structure
MENKAKVGIDFINTIPKQILTSLIEQYSPNNGEIELVVLYGDNFLRFKNSVDAIGAKVED
CCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCHHHHCCCHHH
LGYGFGILIIKVNDLNRIIELEGLQYIELPKILYTSAYDSNRASCIPSVWNNYNLTGEGI
CCCCEEEEEEEECCCCEEEEECCCCEEECCCEEEECCCCCCCCCCCHHHHCCCCCCCCEE
LVGFLDTGIDYTHNAFKDDEGNTRIEYIYDLENGVVYDKNKINEALKSEDPFSIVPEIDL
EEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECHHHHHHHHCCCCCCEEEECCCC
SGHGTHVAGIACAGGNINFDNYGVAYKSSIAMVKITGENSLRAALSTQLMRGLKFLMDKS
CCCCCEEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
NEINKPLVVNISLSTNDGSHNGSSLLEKYIQTFTQLQKAVIVVAAGNEGNSAHHVGGKMK
CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCC
KEEDLDLNIGDGEKGIILDFFKPVLVDVSVEVISPTGISTGPMGLSESYKERFVGREKIV
CCCCCEEEECCCCCCEEHHHHCHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEE
VYSTGPKPFDIQGQTTISILPLGDTITSGGWRIIVRKLNNYDGYFDVWLPIAEGLNERTR
EEECCCCCEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEHHCCCCHHHH
FLQPSVYNTLGIPATVEGVISVGSYNFLNNNLSAFSGRGVVRPEWLIKPDLVAPGENILS
HCCCCHHHHCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHH
TVEEQGFDTKSGTSMAAPQVSGICALLFEWGIIRNNDPFLYGERIKYYLIKGAKRTIFGE
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCEEEECCEEEEEEECCCEEEEEC
AYPNPDLGYGFVCLDRTMELLINRR
CCCCCCCCCEEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA