| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311543
Identifier: 18311543
GI number: 18311543
Start: 2932193
End: 2933941
Strand: Reverse
Name: 18311543
Synonym: CPE2561
Alternate gene names: NA
Gene position: 2933941-2932193 (Counterclockwise)
Preceding gene: 18311544
Following gene: 18311542
Centisome position: 96.78
GC content: 31.96
Gene sequence:
>1749_bases ATGGAAACTGTATCTAATAAAGCGAATCTATTAGTTGACCCTGAAAGCATGAATTTTCTTGTTGAATATAGAGGGGATAT AGAGAATGAAGTTAAGGATATTGAAAATGTTGAAGTCTATATAATTGATGGTACTTATGCTGTTTTATCCATGAAAAATG TTGACTATGATAGTGTTATTCAGATGATAAATTCCTTGGTTTTTATAGAGCTCGGAGGAATATATACTCTAAGTAGTACA AGTCCTATAGAGGCCTCTAAGGTAGAAAACTTTCATAATAGTCCATACTTAAAATTGACAGGGAAAGATGTGATTGTTGG AATTATTGATACTGGAATAGATTATTTAAATCCTGAATTTACTGATAGTAATGGAAAGACTAGAATATTAAAAATATGGG ATCAATCATTAAAAACAGATAAGTATCCTAAAGATATGTTTTATGGAACTGAGTATAGTGAAGAAGAAATCAATCAAGCA ATAGAACTTAATAATAGTGGCGGAGATCCATATACCATAGTTCAATCTAAAGATGATGTAGGACATGGCACAGAGATGGC TTGCATAATAGCAGGAAGTGGAAAGGATGAAAATTTAACAGGGGTAGTTCCAGAATGTGACCTTGCAATAGTAAAGTTAG ATAGAGCTTTTAAAAAATACACAGATTATTTCTTTGCAAAGGGTGACGCTGTTAAGTATAGAAATGTAGACATACTTTTA GCAATGAAATATTTATATAATTTATCATTTCAATATAATAAACCAATGGTTATATATATTCCTATGGGAACTAATTTTGG AGCCCATGATGGATCAAGTATTTTAGAAAGATATATAAATGATATTTCAAATAAAAGAGGAATTGCTGTAATTGCCTCAT CTGGCAATCAAGGAAATACTAATACCCATGCTGATGGAATAATAACAGAGATGGGTGATAATAAAACCATAGAGCTTGAT GTTGGAGAGGATCAAGATGGTATTATGATGATTATTTTAGGTTATAAACCTGATAAATTTAAGCTTTCAATAATTTCACC ATCAGGAGAACTTATTGAAAATGCTAATCCCTTAACTAACTATGGTGGAAATAAAAATTTAGCTGTTGAAAATGGATATA AAATAAATTTTATATATGAAGGAACAACCATGGATGTTTTTTATGATTCACCAGATGAACTTACTGGAGGGGAGAGAATT GTAATAAGAGCACAAAATTTAAAGCCTGGTATATGGAGATTTAGATTAACTGGACAGCATATAACCTTTGGAAATTTTGA TGCCTATATATTGCAAAAAGAATTATTAGCAGAGGGAACAAAATTTTTAATATCATCACCATACACAACATTGACCATTC CAGGAGCCGCAGAGAAAATGATAACTGTAGCTTCATATAATCAAGAGAATAATACCATATTATCTTCATCAGGAAGAGGG TATGCAAGAAATGATATTATTCAACCTATTATTGCAGCCGGTGGAGTAAATGCTTTAACTATAAACAACAAAGGAGAAAA GGTATCAGTTAGTGGGGGAAGCGTCGCTGCGGCTATAGTAGCTGGGTGCTGTGCAATGTTATTTCAATGGGGAATTGTTT ATAATAATGATCCAACACTATATGTAGCTAAACTTCAAACATACCTAATAAGAGGTGTGAATACTAGAGAAGGTGACATG TACCCAAATCGAGAGTGGGGATATGGAACTATAGATATGATCAATGTTTTTAATAGTTTAAGAACCTAG
Upstream 100 bases:
>100_bases AGAGGACGATCTTTGGTGAGGCATATCCAAATCCAGACTTGGGATATGGATTTGTATGTTTAGATAGAACAATGGAATTA TTAATTAATAGGAGATAGTT
Downstream 100 bases:
>100_bases AGTTTTAAATATTACAAAGTAAAAAATAATTTTGATTATATTTTAATTACAAATACTTATTAACAAAATAGATATTAATC TCATAAACTATATGGTATTA
Product: Ser-type protease
Products: NA
Alternate protein names: Peptidase S8 And S; Subtilase Family Protein; Peptidase S8/S53 Subtilisin Kexin Sedolisin; Subtilisin Like Protease; Ser-Type Protease; Germination-Specific Protease; Subtilase; Serine-Type Protease; Spore-Cortex-Lytic; Protease CspB; DNA/RNA Non-Specific Endonuclease
Number of amino acids: Translated: 582; Mature: 582
Protein sequence:
>582_residues METVSNKANLLVDPESMNFLVEYRGDIENEVKDIENVEVYIIDGTYAVLSMKNVDYDSVIQMINSLVFIELGGIYTLSST SPIEASKVENFHNSPYLKLTGKDVIVGIIDTGIDYLNPEFTDSNGKTRILKIWDQSLKTDKYPKDMFYGTEYSEEEINQA IELNNSGGDPYTIVQSKDDVGHGTEMACIIAGSGKDENLTGVVPECDLAIVKLDRAFKKYTDYFFAKGDAVKYRNVDILL AMKYLYNLSFQYNKPMVIYIPMGTNFGAHDGSSILERYINDISNKRGIAVIASSGNQGNTNTHADGIITEMGDNKTIELD VGEDQDGIMMIILGYKPDKFKLSIISPSGELIENANPLTNYGGNKNLAVENGYKINFIYEGTTMDVFYDSPDELTGGERI VIRAQNLKPGIWRFRLTGQHITFGNFDAYILQKELLAEGTKFLISSPYTTLTIPGAAEKMITVASYNQENNTILSSSGRG YARNDIIQPIIAAGGVNALTINNKGEKVSVSGGSVAAAIVAGCCAMLFQWGIVYNNDPTLYVAKLQTYLIRGVNTREGDM YPNREWGYGTIDMINVFNSLRT
Sequences:
>Translated_582_residues METVSNKANLLVDPESMNFLVEYRGDIENEVKDIENVEVYIIDGTYAVLSMKNVDYDSVIQMINSLVFIELGGIYTLSST SPIEASKVENFHNSPYLKLTGKDVIVGIIDTGIDYLNPEFTDSNGKTRILKIWDQSLKTDKYPKDMFYGTEYSEEEINQA IELNNSGGDPYTIVQSKDDVGHGTEMACIIAGSGKDENLTGVVPECDLAIVKLDRAFKKYTDYFFAKGDAVKYRNVDILL AMKYLYNLSFQYNKPMVIYIPMGTNFGAHDGSSILERYINDISNKRGIAVIASSGNQGNTNTHADGIITEMGDNKTIELD VGEDQDGIMMIILGYKPDKFKLSIISPSGELIENANPLTNYGGNKNLAVENGYKINFIYEGTTMDVFYDSPDELTGGERI VIRAQNLKPGIWRFRLTGQHITFGNFDAYILQKELLAEGTKFLISSPYTTLTIPGAAEKMITVASYNQENNTILSSSGRG YARNDIIQPIIAAGGVNALTINNKGEKVSVSGGSVAAAIVAGCCAMLFQWGIVYNNDPTLYVAKLQTYLIRGVNTREGDM YPNREWGYGTIDMINVFNSLRT >Mature_582_residues METVSNKANLLVDPESMNFLVEYRGDIENEVKDIENVEVYIIDGTYAVLSMKNVDYDSVIQMINSLVFIELGGIYTLSST SPIEASKVENFHNSPYLKLTGKDVIVGIIDTGIDYLNPEFTDSNGKTRILKIWDQSLKTDKYPKDMFYGTEYSEEEINQA IELNNSGGDPYTIVQSKDDVGHGTEMACIIAGSGKDENLTGVVPECDLAIVKLDRAFKKYTDYFFAKGDAVKYRNVDILL AMKYLYNLSFQYNKPMVIYIPMGTNFGAHDGSSILERYINDISNKRGIAVIASSGNQGNTNTHADGIITEMGDNKTIELD VGEDQDGIMMIILGYKPDKFKLSIISPSGELIENANPLTNYGGNKNLAVENGYKINFIYEGTTMDVFYDSPDELTGGERI VIRAQNLKPGIWRFRLTGQHITFGNFDAYILQKELLAEGTKFLISSPYTTLTIPGAAEKMITVASYNQENNTILSSSGRG YARNDIIQPIIAAGGVNALTINNKGEKVSVSGGSVAAAIVAGCCAMLFQWGIVYNNDPTLYVAKLQTYLIRGVNTREGDM YPNREWGYGTIDMINVFNSLRT
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64397; Mature: 64397
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METVSNKANLLVDPESMNFLVEYRGDIENEVKDIENVEVYIIDGTYAVLSMKNVDYDSVI CCCCCCCCCEEECCCCCEEEEEECCCCHHHHHCCCCEEEEEEECCEEEEEECCCCHHHHH QMINSLVFIELGGIYTLSSTSPIEASKVENFHNSPYLKLTGKDVIVGIIDTGIDYLNPEF HHHHCEEEEEECCEEEECCCCCCCHHHHHHCCCCCEEEEECCEEEEEEECCCCHHCCCCE TDSNGKTRILKIWDQSLKTDKYPKDMFYGTEYSEEEINQAIELNNSGGDPYTIVQSKDDV ECCCCCEEEEEEECHHCCCCCCCCHHCCCCCCCHHHHHHEEEECCCCCCEEEEEECCCCC GHGTEMACIIAGSGKDENLTGVVPECDLAIVKLDRAFKKYTDYFFAKGDAVKYRNVDILL CCCCEEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHEEECCCEEEEECCEEEE AMKYLYNLSFQYNKPMVIYIPMGTNFGAHDGSSILERYINDISNKRGIAVIASSGNQGNT EEHHHHCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC NTHADGIITEMGDNKTIELDVGEDQDGIMMIILGYKPDKFKLSIISPSGELIENANPLTN CCCCCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCHHHCCCCCCCC YGGNKNLAVENGYKINFIYEGTTMDVFYDSPDELTGGERIVIRAQNLKPGIWRFRLTGQH CCCCCCEEEECCEEEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCE ITFGNFDAYILQKELLAEGTKFLISSPYTTLTIPGAAEKMITVASYNQENNTILSSSGRG EEECCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCEEEEEEECCCCCCEEEECCCCC YARNDIIQPIIAAGGVNALTINNKGEKVSVSGGSVAAAIVAGCCAMLFQWGIVYNNDPTL CCHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCEEECCCCCE YVAKLQTYLIRGVNTREGDMYPNREWGYGTIDMINVFNSLRT EEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure METVSNKANLLVDPESMNFLVEYRGDIENEVKDIENVEVYIIDGTYAVLSMKNVDYDSVI CCCCCCCCCEEECCCCCEEEEEECCCCHHHHHCCCCEEEEEEECCEEEEEECCCCHHHHH QMINSLVFIELGGIYTLSSTSPIEASKVENFHNSPYLKLTGKDVIVGIIDTGIDYLNPEF HHHHCEEEEEECCEEEECCCCCCCHHHHHHCCCCCEEEEECCEEEEEEECCCCHHCCCCE TDSNGKTRILKIWDQSLKTDKYPKDMFYGTEYSEEEINQAIELNNSGGDPYTIVQSKDDV ECCCCCEEEEEEECHHCCCCCCCCHHCCCCCCCHHHHHHEEEECCCCCCEEEEEECCCCC GHGTEMACIIAGSGKDENLTGVVPECDLAIVKLDRAFKKYTDYFFAKGDAVKYRNVDILL CCCCEEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHEEECCCEEEEECCEEEE AMKYLYNLSFQYNKPMVIYIPMGTNFGAHDGSSILERYINDISNKRGIAVIASSGNQGNT EEHHHHCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC NTHADGIITEMGDNKTIELDVGEDQDGIMMIILGYKPDKFKLSIISPSGELIENANPLTN CCCCCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCHHHCCCCCCCC YGGNKNLAVENGYKINFIYEGTTMDVFYDSPDELTGGERIVIRAQNLKPGIWRFRLTGQH CCCCCCEEEECCEEEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCE ITFGNFDAYILQKELLAEGTKFLISSPYTTLTIPGAAEKMITVASYNQENNTILSSSGRG EEECCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCEEEEEEECCCCCCEEEECCCCC YARNDIIQPIIAAGGVNALTINNKGEKVSVSGGSVAAAIVAGCCAMLFQWGIVYNNDPTL CCHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCEEECCCCCE YVAKLQTYLIRGVNTREGDMYPNREWGYGTIDMINVFNSLRT EEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA