| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311498
Identifier: 18311498
GI number: 18311498
Start: 2880060
End: 2881682
Strand: Reverse
Name: 18311498
Synonym: CPE2516
Alternate gene names: NA
Gene position: 2881682-2880060 (Counterclockwise)
Preceding gene: 18311499
Following gene: 18311497
Centisome position: 95.06
GC content: 28.47
Gene sequence:
>1623_bases TTGGCACATAATAAATCATATAGAACTTTTATAATATTACAAGAAGATGAAAAGGGGCATTCTATAGCTTCAGATAAGCC TTTAACTGGATATGCCAAGATAGAAACTAAGAATGATAAATGTAAAGTTTCTTTTTATGCTCAAAACTTAAAGAAAGAAT ACAAAGATTGTTATATGATGCTTATTTGTAACAAGAAAGATTTTAAGAAGAATATAAATCTTGGTCCAATGAACATAAAT CAACAAGGAAAGGCAGAAATGAGTTTAGAATATGATTCTATCAACATAGGAGATTTAAATGTATCTTATGAGAATATAGT AGGAGCTGCTATAGGAAAAAATATTAATGGTAGAACAGTATTCTTTATGTGTGGATTTTTAAATAACCAAATGCCAAAGG ATAATTGGAAAAATTATGAGATTAAGATGATATCAGGCAAAGAAAAGTCTCATTACGATAAAAATAATAAAGAAGACGAA ATGAAAAAAGAATGTCCTATTAACATGAAAGAGGATAAGGAAAAATATAATGATGATAAAGATTATTATAAGGAAAAGAA AGACAAAGATGAAAAAGATAAGTATAAAGAGTATCTAAAAGAAAAGGACAAGGATTATTTAAAAGAAGAGAATAAAGAAA AGGAATGTAAAAAAGAATATTGTAAGGATACAGAAGATAAAGAGGATAAAGATGATTGCAAAGAGCATTTAAAAGAAGAA TATAAAGAGAAAAAAGATGACTGTAGAGGAAAAGACAAAGAAGAGTGCAAGCACCATGATAAAGAAGAGAAGCATGAGGA AAAATGTGAAGATAAGAAAGAAGATAAATGTGATAAAGAGGACAAATATAAGAAAGAAGATAAATATAAGGATAAATATG AAGTAGATGATGATTGTAAAGATAAACATGAAGAGCATAAAGAATATAAGGATAAAGATACTGATAAAGATAAACATGAA GAAAAGAAAATAGAAGGTTATAAAGACTGCTATAAGGAAAAATATCACCGCAATGATAATTGGGATTATAGATCAAAATT ACAAGAGTGTGATAGATTTATAAGTAAAATAGATTTAGAAAGAGAATATGATCCTTATGATGGAGAACGTTATGAGCTAG GTAGAAGATTTGCAGAGTACGAAAATGAAATAGAGCAAATGAAACTTAGAGATTGTAAGGAGAAAGAAGAAAAAACTTAT GAAGTTGACTTTGATTGTCCTATAGGTGAAGTTTTAATGGGAGCTTTAGATGGATGTAAGAAGGTTCCTAAATTTGCAGA GGATATAAAAAGATGTGCATGGTATAAGGTTGATGTTAGAAACTTCGATGATATGTGTAATATGTCAAACTATAATAAAT ACACAATGATGTATTATCCTATGATTAATTACTATCCTTATATAAGCAAAGCAGGTCATTTCTTCTTTGGTGTAAAGTGT GATAAGAATGGAGATATAAAATATATTTTATATGCTATTCCAGGAACTAAGGATAGAAAAGATCAACCATACGGTGGTAG AACTGGTTTCGTTACATGGGACAGATATGGAGATAGCGAAAATGGCTATTGGATAATGTTCTATGATTTTGAAAACTCAT CTGTAGTTATCCCTATGAAATAA
Upstream 100 bases:
>100_bases GAATATTTATAGAGAATAAGAATTTTTAAATTTTTATTCTCTTTTTTTTTGTTCTCTCATATACTGTAGAGAATAAAATT ATATTGGAGGGACCAGAGAA
Downstream 100 bases:
>100_bases TCAAGAGAAAAACTGTTTATATAGATTTCATTTCTATATAAACAGTTTTTTATTTATGTAATATTAATACTCTATTTAGT AATTTTTACTTACTTATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 540; Mature: 539
Protein sequence:
>540_residues MAHNKSYRTFIILQEDEKGHSIASDKPLTGYAKIETKNDKCKVSFYAQNLKKEYKDCYMMLICNKKDFKKNINLGPMNIN QQGKAEMSLEYDSINIGDLNVSYENIVGAAIGKNINGRTVFFMCGFLNNQMPKDNWKNYEIKMISGKEKSHYDKNNKEDE MKKECPINMKEDKEKYNDDKDYYKEKKDKDEKDKYKEYLKEKDKDYLKEENKEKECKKEYCKDTEDKEDKDDCKEHLKEE YKEKKDDCRGKDKEECKHHDKEEKHEEKCEDKKEDKCDKEDKYKKEDKYKDKYEVDDDCKDKHEEHKEYKDKDTDKDKHE EKKIEGYKDCYKEKYHRNDNWDYRSKLQECDRFISKIDLEREYDPYDGERYELGRRFAEYENEIEQMKLRDCKEKEEKTY EVDFDCPIGEVLMGALDGCKKVPKFAEDIKRCAWYKVDVRNFDDMCNMSNYNKYTMMYYPMINYYPYISKAGHFFFGVKC DKNGDIKYILYAIPGTKDRKDQPYGGRTGFVTWDRYGDSENGYWIMFYDFENSSVVIPMK
Sequences:
>Translated_540_residues MAHNKSYRTFIILQEDEKGHSIASDKPLTGYAKIETKNDKCKVSFYAQNLKKEYKDCYMMLICNKKDFKKNINLGPMNIN QQGKAEMSLEYDSINIGDLNVSYENIVGAAIGKNINGRTVFFMCGFLNNQMPKDNWKNYEIKMISGKEKSHYDKNNKEDE MKKECPINMKEDKEKYNDDKDYYKEKKDKDEKDKYKEYLKEKDKDYLKEENKEKECKKEYCKDTEDKEDKDDCKEHLKEE YKEKKDDCRGKDKEECKHHDKEEKHEEKCEDKKEDKCDKEDKYKKEDKYKDKYEVDDDCKDKHEEHKEYKDKDTDKDKHE EKKIEGYKDCYKEKYHRNDNWDYRSKLQECDRFISKIDLEREYDPYDGERYELGRRFAEYENEIEQMKLRDCKEKEEKTY EVDFDCPIGEVLMGALDGCKKVPKFAEDIKRCAWYKVDVRNFDDMCNMSNYNKYTMMYYPMINYYPYISKAGHFFFGVKC DKNGDIKYILYAIPGTKDRKDQPYGGRTGFVTWDRYGDSENGYWIMFYDFENSSVVIPMK >Mature_539_residues AHNKSYRTFIILQEDEKGHSIASDKPLTGYAKIETKNDKCKVSFYAQNLKKEYKDCYMMLICNKKDFKKNINLGPMNINQ QGKAEMSLEYDSINIGDLNVSYENIVGAAIGKNINGRTVFFMCGFLNNQMPKDNWKNYEIKMISGKEKSHYDKNNKEDEM KKECPINMKEDKEKYNDDKDYYKEKKDKDEKDKYKEYLKEKDKDYLKEENKEKECKKEYCKDTEDKEDKDDCKEHLKEEY KEKKDDCRGKDKEECKHHDKEEKHEEKCEDKKEDKCDKEDKYKKEDKYKDKYEVDDDCKDKHEEHKEYKDKDTDKDKHEE KKIEGYKDCYKEKYHRNDNWDYRSKLQECDRFISKIDLEREYDPYDGERYELGRRFAEYENEIEQMKLRDCKEKEEKTYE VDFDCPIGEVLMGALDGCKKVPKFAEDIKRCAWYKVDVRNFDDMCNMSNYNKYTMMYYPMINYYPYISKAGHFFFGVKCD KNGDIKYILYAIPGTKDRKDQPYGGRTGFVTWDRYGDSENGYWIMFYDFENSSVVIPMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65215; Mature: 65083
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHNKSYRTFIILQEDEKGHSIASDKPLTGYAKIETKNDKCKVSFYAQNLKKEYKDCYMM CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHEEEE LICNKKDFKKNINLGPMNINQQGKAEMSLEYDSINIGDLNVSYENIVGAAIGKNINGRTV EEECCHHHHHCCCCCCCCCCCCCCCEEEEEECCEEECCCCCCHHHHHHHHHCCCCCCCEE FFMCGFLNNQMPKDNWKNYEIKMISGKEKSHYDKNNKEDEMKKECPINMKEDKEKYNDDK EEEEEHHCCCCCCCCCCCEEEEEECCCCHHCCCCCCCHHHHHHHCCCCCHHHHHHCCCCH DYYKEKKDKDEKDKYKEYLKEKDKDYLKEENKEKECKKEYCKDTEDKEDKDDCKEHLKEE HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH YKEKKDDCRGKDKEECKHHDKEEKHEEKCEDKKEDKCDKEDKYKKEDKYKDKYEVDDDCK HHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHH DKHEEHKEYKDKDTDKDKHEEKKIEGYKDCYKEKYHRNDNWDYRSKLQECDRFISKIDLE HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC REYDPYDGERYELGRRFAEYENEIEQMKLRDCKEKEEKTYEVDFDCPIGEVLMGALDGCK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH KVPKFAEDIKRCAWYKVDVRNFDDMCNMSNYNKYTMMYYPMINYYPYISKAGHFFFGVKC HHHHHHHHHHHHHEEEEECCCCHHHHCCCCCCCEEEEEEEHHHHCCCHHCCCCEEEEEEE DKNGDIKYILYAIPGTKDRKDQPYGGRTGFVTWDRYGDSENGYWIMFYDFENSSVVIPMK CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCEEEEECC >Mature Secondary Structure AHNKSYRTFIILQEDEKGHSIASDKPLTGYAKIETKNDKCKVSFYAQNLKKEYKDCYMM CCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHEEEE LICNKKDFKKNINLGPMNINQQGKAEMSLEYDSINIGDLNVSYENIVGAAIGKNINGRTV EEECCHHHHHCCCCCCCCCCCCCCCEEEEEECCEEECCCCCCHHHHHHHHHCCCCCCCEE FFMCGFLNNQMPKDNWKNYEIKMISGKEKSHYDKNNKEDEMKKECPINMKEDKEKYNDDK EEEEEHHCCCCCCCCCCCEEEEEECCCCHHCCCCCCCHHHHHHHCCCCCHHHHHHCCCCH DYYKEKKDKDEKDKYKEYLKEKDKDYLKEENKEKECKKEYCKDTEDKEDKDDCKEHLKEE HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH YKEKKDDCRGKDKEECKHHDKEEKHEEKCEDKKEDKCDKEDKYKKEDKYKDKYEVDDDCK HHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHH DKHEEHKEYKDKDTDKDKHEEKKIEGYKDCYKEKYHRNDNWDYRSKLQECDRFISKIDLE HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC REYDPYDGERYELGRRFAEYENEIEQMKLRDCKEKEEKTYEVDFDCPIGEVLMGALDGCK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH KVPKFAEDIKRCAWYKVDVRNFDDMCNMSNYNKYTMMYYPMINYYPYISKAGHFFFGVKC HHHHHHHHHHHHHEEEEECCCCHHHHCCCCCCCEEEEEEEHHHHCCCHHCCCCEEEEEEE DKNGDIKYILYAIPGTKDRKDQPYGGRTGFVTWDRYGDSENGYWIMFYDFENSSVVIPMK CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA