| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311079
Identifier: 18311079
GI number: 18311079
Start: 2405245
End: 2406501
Strand: Reverse
Name: 18311079
Synonym: CPE2097
Alternate gene names: NA
Gene position: 2406501-2405245 (Counterclockwise)
Preceding gene: 18311080
Following gene: 18311078
Centisome position: 79.39
GC content: 26.89
Gene sequence:
>1257_bases ATGAAAAGGGGTAAAATTTTAATTTGGGTTTTAGCTGGGGTTATTACTACAGGACTTTTAATAAGTTCCTTTATAAGTTA TAAAAGTACTAATAAGTATGGAGGGGAGTTATATATACTATCTAATAATGCTGCTGAGGATTCTGAAAATAATAAAGTAA AGGTTATTAAAGAGCATGATTTTAAATTAGAAGAAGGACTATATGACTATGAAAGCTTATTAGTTAGAGATGGAAAGCTT TATTTAGAAAGCAGAAATAGGGATGGAAAGCTCTTAAAAACAGAGGAAATTATTTTTGAAGGAAATAATTCTAAGAGGGT TGAAGTTGAAAAGTTAAAAGAAGCTCCAAATCTTAGAGATATTGAATTTATACTAGATAACTTTGAGTTTGAAGATTTAG GAAATGGCAATTGGAAGATTTTTAGTAAAGATTATGAAAAAGAAGAGATAGTTAATATAGAGAAGTTTAATAAAAATAAT TTTGCAGAAGAGACCTTAAAGGAATCAGAAGAATATTATGTTTTAGAAGATTATTTGATTTTTTTTATAAATAGAAGATT TGATTGGGGAGAAGGAATTTGGGATAAAGATGGAGATTATAAAGAAATAAGATGGTATGACTTTAACAATGAACTTTGGG ATAGTATTGAAGTACCTAAAGAAGTTTATTTAGAGAGAAGTTTAATAGGTGTAGTAGATAATAAAGTTTTTATTTCAGGA AGTAATATGAAAGGTCAACAATTTCCAAGTAAAATATATTCTTTAGATTTAAAAGAAAAAGTTTTAAAAGATGAAGTTGA TTTATTAGAAAAAGTGGAAGCTTACTATGATTTAGCTTTTTTAAATGATGAAAAAATTTTATTTCATTGTGGAAGTAGTG AGGGAGGAAAAGTTAAAATGATAGATTTAAGAAATAAAGTCACCACAGAATTATATAAATCTAATCTAGACGTAGAAAGA TTCTTTTTATCTCAGAAAGTAGCTCCATCAGGAGATAAGATTTTTTATCTTTCTCAAAATGGAGGGAACATGGAGGTTAA GGTTTTAAAGATAGGGAATAACAAAACCATAGCTGAAGGAAAAGTTTATGATTATGAATATAATAAAGCTGCTCTTATAA AGGAGTATGGAGAGGATTATATTGATCCAACACCACAGATTTTATGGAATAATGATGGAAAATATTTAATTATAGGAGAA AAAGAAAAGGGAAGTATAAAAATATCAAATATAAAAGTTTTAGAATTAAGCCAGTAA
Upstream 100 bases:
>100_bases TTGGAAATATTTTGGCAATAAGATTTAATTTTTTAGAAAAAACTCCTGTGTAAAATAAAAGCAAATAGTAATTTTATAGA AGATTTTGAAAGGAGTATTT
Downstream 100 bases:
>100_bases AATTTGTGAGGGGATTTTATGAAAAAAAGAAAGGTTTTAGGTGGAGTTTTATTTAGTTTAGTACTAATAACATTAATTAC TCTAATTATGTTTTTTAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MKRGKILIWVLAGVITTGLLISSFISYKSTNKYGGELYILSNNAAEDSENNKVKVIKEHDFKLEEGLYDYESLLVRDGKL YLESRNRDGKLLKTEEIIFEGNNSKRVEVEKLKEAPNLRDIEFILDNFEFEDLGNGNWKIFSKDYEKEEIVNIEKFNKNN FAEETLKESEEYYVLEDYLIFFINRRFDWGEGIWDKDGDYKEIRWYDFNNELWDSIEVPKEVYLERSLIGVVDNKVFISG SNMKGQQFPSKIYSLDLKEKVLKDEVDLLEKVEAYYDLAFLNDEKILFHCGSSEGGKVKMIDLRNKVTTELYKSNLDVER FFLSQKVAPSGDKIFYLSQNGGNMEVKVLKIGNNKTIAEGKVYDYEYNKAALIKEYGEDYIDPTPQILWNNDGKYLIIGE KEKGSIKISNIKVLELSQ
Sequences:
>Translated_418_residues MKRGKILIWVLAGVITTGLLISSFISYKSTNKYGGELYILSNNAAEDSENNKVKVIKEHDFKLEEGLYDYESLLVRDGKL YLESRNRDGKLLKTEEIIFEGNNSKRVEVEKLKEAPNLRDIEFILDNFEFEDLGNGNWKIFSKDYEKEEIVNIEKFNKNN FAEETLKESEEYYVLEDYLIFFINRRFDWGEGIWDKDGDYKEIRWYDFNNELWDSIEVPKEVYLERSLIGVVDNKVFISG SNMKGQQFPSKIYSLDLKEKVLKDEVDLLEKVEAYYDLAFLNDEKILFHCGSSEGGKVKMIDLRNKVTTELYKSNLDVER FFLSQKVAPSGDKIFYLSQNGGNMEVKVLKIGNNKTIAEGKVYDYEYNKAALIKEYGEDYIDPTPQILWNNDGKYLIIGE KEKGSIKISNIKVLELSQ >Mature_418_residues MKRGKILIWVLAGVITTGLLISSFISYKSTNKYGGELYILSNNAAEDSENNKVKVIKEHDFKLEEGLYDYESLLVRDGKL YLESRNRDGKLLKTEEIIFEGNNSKRVEVEKLKEAPNLRDIEFILDNFEFEDLGNGNWKIFSKDYEKEEIVNIEKFNKNN FAEETLKESEEYYVLEDYLIFFINRRFDWGEGIWDKDGDYKEIRWYDFNNELWDSIEVPKEVYLERSLIGVVDNKVFISG SNMKGQQFPSKIYSLDLKEKVLKDEVDLLEKVEAYYDLAFLNDEKILFHCGSSEGGKVKMIDLRNKVTTELYKSNLDVER FFLSQKVAPSGDKIFYLSQNGGNMEVKVLKIGNNKTIAEGKVYDYEYNKAALIKEYGEDYIDPTPQILWNNDGKYLIIGE KEKGSIKISNIKVLELSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48693; Mature: 48693
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRGKILIWVLAGVITTGLLISSFISYKSTNKYGGELYILSNNAAEDSENNKVKVIKEHD CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECC FKLEEGLYDYESLLVRDGKLYLESRNRDGKLLKTEEIIFEGNNSKRVEVEKLKEAPNLRD CCHHCCCHHHHHHEEECCEEEEEECCCCCCEEEEEEEEEECCCCCEEEHHHHHCCCCCCE IEFILDNFEFEDLGNGNWKIFSKDYEKEEIVNIEKFNKNNFAEETLKESEEYYVLEDYLI EHHHCCCCCEEECCCCCEEEEECCCCHHHEEEHHHCCCCCCHHHHHHCCCCEEEEEEEEE FFINRRFDWGEGIWDKDGDYKEIRWYDFNNELWDSIEVPKEVYLERSLIGVVDNKVFISG EEEECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHCCCHHHHHHHHHEEEECCEEEEEC SNMKGQQFPSKIYSLDLKEKVLKDEVDLLEKVEAYYDLAFLNDEKILFHCGSSEGGKVKM CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCEEEE IDLRNKVTTELYKSNLDVERFFLSQKVAPSGDKIFYLSQNGGNMEVKVLKIGNNKTIAEG EECCCHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEECC KVYDYEYNKAALIKEYGEDYIDPTPQILWNNDGKYLIIGEKEKGSIKISNIKVLELSQ EEEEEECCCHHHHHHHCHHHCCCCCCEEECCCCCEEEEECCCCCCEEEEEEEEEEECC >Mature Secondary Structure MKRGKILIWVLAGVITTGLLISSFISYKSTNKYGGELYILSNNAAEDSENNKVKVIKEHD CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECC FKLEEGLYDYESLLVRDGKLYLESRNRDGKLLKTEEIIFEGNNSKRVEVEKLKEAPNLRD CCHHCCCHHHHHHEEECCEEEEEECCCCCCEEEEEEEEEECCCCCEEEHHHHHCCCCCCE IEFILDNFEFEDLGNGNWKIFSKDYEKEEIVNIEKFNKNNFAEETLKESEEYYVLEDYLI EHHHCCCCCEEECCCCCEEEEECCCCHHHEEEHHHCCCCCCHHHHHHCCCCEEEEEEEEE FFINRRFDWGEGIWDKDGDYKEIRWYDFNNELWDSIEVPKEVYLERSLIGVVDNKVFISG EEEECCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHCCCHHHHHHHHHEEEECCEEEEEC SNMKGQQFPSKIYSLDLKEKVLKDEVDLLEKVEAYYDLAFLNDEKILFHCGSSEGGKVKM CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCEEEE IDLRNKVTTELYKSNLDVERFFLSQKVAPSGDKIFYLSQNGGNMEVKVLKIGNNKTIAEG EECCCHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEECC KVYDYEYNKAALIKEYGEDYIDPTPQILWNNDGKYLIIGEKEKGSIKISNIKVLELSQ EEEEEECCCHHHHHHHCHHHCCCCCCEEECCCCCEEEEECCCCCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA