| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is fmhB [H]
Identifier: 18311072
GI number: 18311072
Start: 2398089
End: 2399426
Strand: Direct
Name: fmhB [H]
Synonym: CPE2090
Alternate gene names: 18311072
Gene position: 2398089-2399426 (Clockwise)
Preceding gene: 18311071
Following gene: 18311073
Centisome position: 79.11
GC content: 28.03
Gene sequence:
>1338_bases TTGTATAAATTTGTAGAAATAAATTCATCAGAAATTGATAAATTTAATGAATCTGATAGAAAGGGTCACATATTCCAAAC ATCTTATTGGGCTGAATTAAAAAAAGATTGGAAGAAGAAATTTATAGCAGGATATGATAATGATAATAATATGGTTATCA CAGCTACTATACTTTTAAGAAAAGCACCATACATAAATAAATATATGGGATATATTCCAAGAAGTTTTACATGTGACTAC AACAATAAAAAATTACTAATAGAATTTACTGAATATCTAAGAGAATTTGCTAAAAAGAATAATATAAGCTTTATAACAAT AGATCCAGATATCCATTTAAAAGAAAATGAAGAAGCTCTTTCAGAAGGTACTGAAATAAAGAACTTCCTTAAGAGTTTAG GTTACAAAAACACAGATAGTAAAAACTTTGAAGCTATACAACCAAACTTTGTATTTAGACTTCCACTTCCAACTGAAGGG AATAAAATGGATATTAAGAAGGCTGTATTTAAAAAATTCTCTAGTAAAACTAGATATAACATAAAAGTTGCTGAGGAAAG AGGATTATCAGTTGAGGTTTATGATAAAGAAACTTTAAATGAAGATGTATTAGACAGATTCCATGAAATCATGGTTACAA CTGGTAAGAGAGATAACTTCTTAGTAAGACATAGAGAATATTTTAAGGACATGATAGATTACTTATATCCACATTGTAGA TTATACATGGTTAAGTATAGCTACGAAAATGACTTCAACAGATTATCAGAAAAATTAAACAAGCAAGAAGAGGCTAAAAC TAAGGCTATTAACAAAATAGAAGAACTTAAAGTAAAGCTTGATGTTGAAACTGATGAGGATAAGAAATCAAGAATTGAAA AGAAATTAAATGACCAAGATAAGAGACTTAAAGAAGCTGAAAGACAAATAGAAGGCTTTAAAAAGAAAATATCTGATATA GAACCTTTCAAAGGTCAAGAAATATATCTTTCAGGATCAATATACTTATACTACGGAAACAAAGCATGGTATCTTTACGG AGCTTCAGAAAATATATTAAGAGATACAATGCCTAACTTTGCTATGCAATGGTCAATGATTTGTGACTCTATTGATCTAG GTTGTGATGTATATGACTTTAGAGGTGTTTCTGGAGACTTAAATCCTGAAAATCCACTATATGGACTTTATAAATTCAAA AAAGGATTTAACGGAAACTTCGTAGAATTTATAGGAGAGTTTGATATTGTTGTTGATAATGGAATATACACACTTTATAA AAAAGCTTTCCCACAATTCAAAAAAATAAGAAATGCTATAATGAATAAGAAACAATAA
Upstream 100 bases:
>100_bases GTTACACTTGAACAGAAAATTATTTCATATTACAATATACTTATTATGTCTTAATGTATATATATGTTTAGAACTGATGA AGTTTAAGGAGGAAACTAAA
Downstream 100 bases:
>100_bases AAAAAGAATGCATATGCATTCTTTTTTTATTTAAAAACTTTATATAAAAAATTTCTCTAAAAAAGCTTCTATACATACTT AAAATTAAATAATTTTTATT
Product: FemAB family protein
Products: NA
Alternate protein names: Factor essential for expression of methicillin resistance X [H]
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MYKFVEINSSEIDKFNESDRKGHIFQTSYWAELKKDWKKKFIAGYDNDNNMVITATILLRKAPYINKYMGYIPRSFTCDY NNKKLLIEFTEYLREFAKKNNISFITIDPDIHLKENEEALSEGTEIKNFLKSLGYKNTDSKNFEAIQPNFVFRLPLPTEG NKMDIKKAVFKKFSSKTRYNIKVAEERGLSVEVYDKETLNEDVLDRFHEIMVTTGKRDNFLVRHREYFKDMIDYLYPHCR LYMVKYSYENDFNRLSEKLNKQEEAKTKAINKIEELKVKLDVETDEDKKSRIEKKLNDQDKRLKEAERQIEGFKKKISDI EPFKGQEIYLSGSIYLYYGNKAWYLYGASENILRDTMPNFAMQWSMICDSIDLGCDVYDFRGVSGDLNPENPLYGLYKFK KGFNGNFVEFIGEFDIVVDNGIYTLYKKAFPQFKKIRNAIMNKKQ
Sequences:
>Translated_445_residues MYKFVEINSSEIDKFNESDRKGHIFQTSYWAELKKDWKKKFIAGYDNDNNMVITATILLRKAPYINKYMGYIPRSFTCDY NNKKLLIEFTEYLREFAKKNNISFITIDPDIHLKENEEALSEGTEIKNFLKSLGYKNTDSKNFEAIQPNFVFRLPLPTEG NKMDIKKAVFKKFSSKTRYNIKVAEERGLSVEVYDKETLNEDVLDRFHEIMVTTGKRDNFLVRHREYFKDMIDYLYPHCR LYMVKYSYENDFNRLSEKLNKQEEAKTKAINKIEELKVKLDVETDEDKKSRIEKKLNDQDKRLKEAERQIEGFKKKISDI EPFKGQEIYLSGSIYLYYGNKAWYLYGASENILRDTMPNFAMQWSMICDSIDLGCDVYDFRGVSGDLNPENPLYGLYKFK KGFNGNFVEFIGEFDIVVDNGIYTLYKKAFPQFKKIRNAIMNKKQ >Mature_445_residues MYKFVEINSSEIDKFNESDRKGHIFQTSYWAELKKDWKKKFIAGYDNDNNMVITATILLRKAPYINKYMGYIPRSFTCDY NNKKLLIEFTEYLREFAKKNNISFITIDPDIHLKENEEALSEGTEIKNFLKSLGYKNTDSKNFEAIQPNFVFRLPLPTEG NKMDIKKAVFKKFSSKTRYNIKVAEERGLSVEVYDKETLNEDVLDRFHEIMVTTGKRDNFLVRHREYFKDMIDYLYPHCR LYMVKYSYENDFNRLSEKLNKQEEAKTKAINKIEELKVKLDVETDEDKKSRIEKKLNDQDKRLKEAERQIEGFKKKISDI EPFKGQEIYLSGSIYLYYGNKAWYLYGASENILRDTMPNFAMQWSMICDSIDLGCDVYDFRGVSGDLNPENPLYGLYKFK KGFNGNFVEFIGEFDIVVDNGIYTLYKKAFPQFKKIRNAIMNKKQ
Specific function: Catalyzes the incorporation of the first glycine of the pentaglycine interpeptide bridge, which is characteristic of the S.aureus peptidoglycan. This glycine is added to the epsilon-amino group of the L-lysine of the membrane-bound lipid II intermediate (
COG id: COG2348
COG function: function code V; Uncharacterized protein involved in methicillin resistance
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the femABX family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016181 - InterPro: IPR003447 [H]
Pfam domain/function: PF02388 FemAB [H]
EC number: NA
Molecular weight: Translated: 52737; Mature: 52737
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKFVEINSSEIDKFNESDRKGHIFQTSYWAELKKDWKKKFIAGYDNDNNMVITATILLR CCEEEECCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEHH KAPYINKYMGYIPRSFTCDYNNKKLLIEFTEYLREFAKKNNISFITIDPDIHLKENEEAL CCCHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCEEECCCHHHH SEGTEIKNFLKSLGYKNTDSKNFEAIQPNFVFRLPLPTEGNKMDIKKAVFKKFSSKTRYN HCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE IKVAEERGLSVEVYDKETLNEDVLDRFHEIMVTTGKRDNFLVRHREYFKDMIDYLYPHCR EEEECCCCCEEEEECHHHCCHHHHHHHHHHHEECCCCCCEEHHHHHHHHHHHHHHCCCEE LYMVKYSYENDFNRLSEKLNKQEEAKTKAINKIEELKVKLDVETDEDKKSRIEKKLNDQD EEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCHHH KRLKEAERQIEGFKKKISDIEPFKGQEIYLSGSIYLYYGNKAWYLYGASENILRDTMPNF HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCEEEEEEECCCHHHHHCCCHH AMQWSMICDSIDLGCDVYDFRGVSGDLNPENPLYGLYKFKKGFNGNFVEFIGEFDIVVDN HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCEEEEEEC GIYTLYKKAFPQFKKIRNAIMNKKQ CHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MYKFVEINSSEIDKFNESDRKGHIFQTSYWAELKKDWKKKFIAGYDNDNNMVITATILLR CCEEEECCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEHH KAPYINKYMGYIPRSFTCDYNNKKLLIEFTEYLREFAKKNNISFITIDPDIHLKENEEAL CCCHHHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCEEECCCHHHH SEGTEIKNFLKSLGYKNTDSKNFEAIQPNFVFRLPLPTEGNKMDIKKAVFKKFSSKTRYN HCCHHHHHHHHHCCCCCCCCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE IKVAEERGLSVEVYDKETLNEDVLDRFHEIMVTTGKRDNFLVRHREYFKDMIDYLYPHCR EEEECCCCCEEEEECHHHCCHHHHHHHHHHHEECCCCCCEEHHHHHHHHHHHHHHCCCEE LYMVKYSYENDFNRLSEKLNKQEEAKTKAINKIEELKVKLDVETDEDKKSRIEKKLNDQD EEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCHHH KRLKEAERQIEGFKKKISDIEPFKGQEIYLSGSIYLYYGNKAWYLYGASENILRDTMPNF HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCEEEEEEECCCHHHHHCCCHH AMQWSMICDSIDLGCDVYDFRGVSGDLNPENPLYGLYKFKKGFNGNFVEFIGEFDIVVDN HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCEEEEEEC GIYTLYKKAFPQFKKIRNAIMNKKQ CHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA