| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is yhiM [H]
Identifier: 18311041
GI number: 18311041
Start: 2352852
End: 2353907
Strand: Reverse
Name: yhiM [H]
Synonym: CPE2059
Alternate gene names: 18311041
Gene position: 2353907-2352852 (Counterclockwise)
Preceding gene: 18311042
Following gene: 18311040
Centisome position: 77.65
GC content: 29.55
Gene sequence:
>1056_bases ATGAATTATTATATAAGCATATTATTTAGAGCCATACCATTATTAATGGGAATAATATGCCTTACTTATGGATCATACAT ATATACATTTGGAGATAAATTTGGCAATGGATATATAATAGCTAGTCATGTAATAATATTTTTTACTGCCATATGTATAG CTTTATTTACTACAGCAGCAACAATAATAAGACAATTAATAAATAAATATAATTCATTTTTTAAGTTTATTCTCCCTACC ATTGGATATTTATGTGCAGCAATAAGTATGTTAGGAGGATTATATTTTGCTTTAAACAATGGAGGAAATCCTGCATATTT TGTGGCTGGAAACATAGGCTTTGGTGTGGGACTGATAGCATGTTGTGTATCTACAGTGGCATTATCATCAACAAAGTTTT TGCTTATACCAAGTAATAGTAAAAATTTAAAAGAAGGTGAAAAACCTAAGGGATGTTTTAGTAAAGAAATGTCCTATGTA CTTATAGCTATTCCTATAATATGTACTTTAATAGGACTAATATTTTCATTTAATCTCTTAAGACATACAGATAAGGTACC TAGTTTGGTAGCTGGATTTGTACTTTTTGGTATATCTTTAGTTTGTGGAAGTTTAATATCATTAGTAGCTAGTGTTTGTA GACAAATACAAAATACTTTTACTAATAAGGAGCGTTGGAAATGGTCCATATTAGTTATTGTATTAGGAAGTATAAACTTT TTATTAGGAATCTGCGTACTTTTATTTAGTAAAAATCAAACCTTTATAGCACCGGGATATGTATTAATAGGTTTAGGGTT AGTATGCTATAGTATTTCAAGTAAGGTATTATTACTTGCTTCAGTGTGGAGAAGAAAGAGCAAGTTATCTAAGAGGATTC CTTTAATACCTGTTATAACAGCCTTAGCTTGTTTATTTTTATCAGCATATTTATCAGAGGCTGAATTAGTTAACATGGCA TATTTTGTACCAGCTCATGTCATGGTTGGATTAGGAGCTATATGCTTCACATTATTCTCCATAGTATCAATATTAGAGAG TGGTACATCAAATTAA
Upstream 100 bases:
>100_bases TATTTGAAGTAGCCTAAAAGTATAGGCTACTTCAAACATTTTATAGAGAAATAATTAAAAGTTTTGAAATTTTAACTATG TAATAAAAGAGGTGAGGAGT
Downstream 100 bases:
>100_bases ATTTATGTATTTTATGGAAGTGAATTTTTAAGGATTCACTTCTTTTTTTATAAATATTTAATGAAAATAAAGGTTTATAA ATATTGAATCTATTAAGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MNYYISILFRAIPLLMGIICLTYGSYIYTFGDKFGNGYIIASHVIIFFTAICIALFTTAATIIRQLINKYNSFFKFILPT IGYLCAAISMLGGLYFALNNGGNPAYFVAGNIGFGVGLIACCVSTVALSSTKFLLIPSNSKNLKEGEKPKGCFSKEMSYV LIAIPIICTLIGLIFSFNLLRHTDKVPSLVAGFVLFGISLVCGSLISLVASVCRQIQNTFTNKERWKWSILVIVLGSINF LLGICVLLFSKNQTFIAPGYVLIGLGLVCYSISSKVLLLASVWRRKSKLSKRIPLIPVITALACLFLSAYLSEAELVNMA YFVPAHVMVGLGAICFTLFSIVSILESGTSN
Sequences:
>Translated_351_residues MNYYISILFRAIPLLMGIICLTYGSYIYTFGDKFGNGYIIASHVIIFFTAICIALFTTAATIIRQLINKYNSFFKFILPT IGYLCAAISMLGGLYFALNNGGNPAYFVAGNIGFGVGLIACCVSTVALSSTKFLLIPSNSKNLKEGEKPKGCFSKEMSYV LIAIPIICTLIGLIFSFNLLRHTDKVPSLVAGFVLFGISLVCGSLISLVASVCRQIQNTFTNKERWKWSILVIVLGSINF LLGICVLLFSKNQTFIAPGYVLIGLGLVCYSISSKVLLLASVWRRKSKLSKRIPLIPVITALACLFLSAYLSEAELVNMA YFVPAHVMVGLGAICFTLFSIVSILESGTSN >Mature_351_residues MNYYISILFRAIPLLMGIICLTYGSYIYTFGDKFGNGYIIASHVIIFFTAICIALFTTAATIIRQLINKYNSFFKFILPT IGYLCAAISMLGGLYFALNNGGNPAYFVAGNIGFGVGLIACCVSTVALSSTKFLLIPSNSKNLKEGEKPKGCFSKEMSYV LIAIPIICTLIGLIFSFNLLRHTDKVPSLVAGFVLFGISLVCGSLISLVASVCRQIQNTFTNKERWKWSILVIVLGSINF LLGICVLLFSKNQTFIAPGYVLIGLGLVCYSISSKVLLLASVWRRKSKLSKRIPLIPVITALACLFLSAYLSEAELVNMA YFVPAHVMVGLGAICFTLFSIVSILESGTSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510980, Length=351, Percent_Identity=49.5726495726496, Blast_Score=325, Evalue=2e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021240 [H]
Pfam domain/function: PF10951 DUF2776 [H]
EC number: NA
Molecular weight: Translated: 38216; Mature: 38216
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYYISILFRAIPLLMGIICLTYGSYIYTFGDKFGNGYIIASHVIIFFTAICIALFTTAA CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH TIIRQLINKYNSFFKFILPTIGYLCAAISMLGGLYFALNNGGNPAYFVAGNIGFGVGLIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCHHHHHHH CCVSTVALSSTKFLLIPSNSKNLKEGEKPKGCFSKEMSYVLIAIPIICTLIGLIFSFNLL HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHTDKVPSLVAGFVLFGISLVCGSLISLVASVCRQIQNTFTNKERWKWSILVIVLGSINF HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LLGICVLLFSKNQTFIAPGYVLIGLGLVCYSISSKVLLLASVWRRKSKLSKRIPLIPVIT HHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ALACLFLSAYLSEAELVNMAYFVPAHVMVGLGAICFTLFSIVSILESGTSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNYYISILFRAIPLLMGIICLTYGSYIYTFGDKFGNGYIIASHVIIFFTAICIALFTTAA CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH TIIRQLINKYNSFFKFILPTIGYLCAAISMLGGLYFALNNGGNPAYFVAGNIGFGVGLIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCHHHHHHH CCVSTVALSSTKFLLIPSNSKNLKEGEKPKGCFSKEMSYVLIAIPIICTLIGLIFSFNLL HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RHTDKVPSLVAGFVLFGISLVCGSLISLVASVCRQIQNTFTNKERWKWSILVIVLGSINF HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LLGICVLLFSKNQTFIAPGYVLIGLGLVCYSISSKVLLLASVWRRKSKLSKRIPLIPVIT HHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ALACLFLSAYLSEAELVNMAYFVPAHVMVGLGAICFTLFSIVSILESGTSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]