| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is spoIIIAB
Identifier: 18310814
GI number: 18310814
Start: 2106937
End: 2107452
Strand: Reverse
Name: spoIIIAB
Synonym: CPE1832
Alternate gene names: NA
Gene position: 2107452-2106937 (Counterclockwise)
Preceding gene: 18310815
Following gene: 18310813
Centisome position: 69.52
GC content: 26.36
Gene sequence:
>516_bases ATGAAAGTTTTTTTTCTGCTTATTATAGTTCTACTTAGTTCTTTAATTGGATACCTGTATGGAGAAGGATTTAGAAATAG ACTTTCTCAACTTAGAGAGTTAAAAAGAGCTTTAATAGATTTTGAAAATGATATTGTTTATACTTACACTCCTTTACCAG AGAGTATAGAGAGTATAGCTTTAAAAGCTAAAAGCCCAATAAAAGAATTATTTAATGAAATTTCTTTTAAATTAAAAAAT AATGAAGTGGAAAATGTATATATGGCTTTTAAAGAAAGTATAAATGAACATAAGAAAGAAATGAATCTAAGGAATAAGGA TTTTGAAATTTTATTAGATCTTTCAAAGTCTTTAGGAGAAACCAATGTAGAGGGACAAATTAAGATATTTAATTTAGCAA AGGAAAAGCTAGATATAGAATTAGAGATTGCTGAAGATGAATGTAATAAAAATACTAAGGTATATAGGTATTTAGGGGTT GCAGTAGGTGCAATGATAGCTATTTTTCTTGTTTAG
Upstream 100 bases:
>100_bases GATATCTATTTTCAATTAGTGCTACTGAATTTATTAGAATGAATAAAAGGTATAAAAATAACAAATCTACTAGAAAAGTT ATCTTTAATAGGAGGAGGAA
Downstream 100 bases:
>100_bases TCTAATAGATTTTTAGAAAAGAAATTTTACTTTTGGACTATTTAATAAGAGTTAAGTTTTAGGGGGAGGCCATATATGTC GGATTTATCTTTGATTTTTC
Product: stage III sporulation protein SpoAB
Products: NA
Alternate protein names: Stage III Sporulation Protein AB; Sporulation Stage III Protein AB; Transcriptional Regulator Fis Family
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIALKAKSPIKELFNEISFKLKN NEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGETNVEGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGV AVGAMIAIFLV
Sequences:
>Translated_171_residues MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIALKAKSPIKELFNEISFKLKN NEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGETNVEGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGV AVGAMIAIFLV >Mature_171_residues MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIALKAKSPIKELFNEISFKLKN NEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGETNVEGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGV AVGAMIAIFLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19762; Mature: 19762
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIA CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH LKAKSPIKELFNEISFKLKNNEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGE HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC TNVEGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGVAVGAMIAIFLV CCCCCEEEEEEEHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIA CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH LKAKSPIKELFNEISFKLKNNEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGE HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC TNVEGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGVAVGAMIAIFLV CCCCCEEEEEEEHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA