| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is spoIIIAA [H]
Identifier: 18310815
GI number: 18310815
Start: 2107599
End: 2108483
Strand: Reverse
Name: spoIIIAA [H]
Synonym: CPE1833
Alternate gene names: 18310815
Gene position: 2108483-2107599 (Counterclockwise)
Preceding gene: 18310816
Following gene: 18310814
Centisome position: 69.55
GC content: 29.38
Gene sequence:
>885_bases TTGAAAGAGATATTTGCTGTATTACCAGATAAGATAAATTCTTGTTTAAAAGATAAAAGTAATTTAAATAAATTACAAGA GATTAGAGTTAAGGTTGGAAAACCTCTTAACATAGTTTTAGATAATACAGAAACAATTTTTAACTATGTAATAAGGAGAG AGGATGTTAAAGCCATAATTCAAAAAATAAGTAACTACTCTTTATATGCCTTTGAGGAAGATATAAGGCAAGGATATATA ACTATCCAAGGAGGGCATAGAGTTGGATTAGCAGGTCAATGCGTAATAGAAGATAATTCTATTAAAACTATTAGAAATAT AACTTCTTTAAATATTAGAGTTTGTAGAGAAATAGTAGGCTGTTCAAATAGTTTAATGAATAGCTTGGTAGAAAATAACA GGGTAAATAATACTTTAATAATATCTCCACCTAAATGTGGAAAAACAACACTTTTAAGAGATATTACAAGAAATATATCT AATGGGATTTCTCAAATTGGTCTTAAGGGAAAGAGAACAGTTGTAATTGATGAAAGAAGCGAAATAGCTGCTTGTTACAA TGGAATTCCCCAAATGAATGTAGGAATGAGAACTGATGTATATGATAACTGCATAAAAAGTGAAGGGATGATGATGGCTG TAAGAGGGCTTTCTCCAGAAGTCATTATATGTGATGAAATTGGGACATATAAAGATATGGAAGGGTTAATGATGGCATAT AATTCAGGAGTTAGTATTATAGCTACCTTACATGGAAGAAATGTTGAAGAATTGTATAGGAGACCTGTTTTTAGGGAGAT TGTTGAAAATAATATAATAAATAAAGTTGTAGTTCTTAGTGGAAAAAAAGGAATTGGAACAATTGAGGGTATATATAATG TTTAA
Upstream 100 bases:
>100_bases GAGAAGAAGAGGACTCCAAAAAAGATTTATTATTTTAAAAATAATTAGAATAATTTCTTATGTAAAGTAATAGATTTAAA TAGAAAGGAGAGGAGGTACT
Downstream 100 bases:
>100_bases CATAATAAAATTATCTTTAAATTTTCTAGTAGGTTATGAAAAATAAGATATCTATTTTCAATTAGTGCTACTGAATTTAT TAGAATGAATAAAAGGTATA
Product: stage III sporulation protein AA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MKEIFAVLPDKINSCLKDKSNLNKLQEIRVKVGKPLNIVLDNTETIFNYVIRREDVKAIIQKISNYSLYAFEEDIRQGYI TIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNIS NGISQIGLKGKRTVVIDERSEIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAY NSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSGKKGIGTIEGIYNV
Sequences:
>Translated_294_residues MKEIFAVLPDKINSCLKDKSNLNKLQEIRVKVGKPLNIVLDNTETIFNYVIRREDVKAIIQKISNYSLYAFEEDIRQGYI TIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNIS NGISQIGLKGKRTVVIDERSEIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAY NSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSGKKGIGTIEGIYNV >Mature_294_residues MKEIFAVLPDKINSCLKDKSNLNKLQEIRVKVGKPLNIVLDNTETIFNYVIRREDVKAIIQKISNYSLYAFEEDIRQGYI TIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNIS NGISQIGLKGKRTVVIDERSEIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAY NSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSGKKGIGTIEGIYNV
Specific function: Unknown
COG id: COG3854
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR014217 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32863; Mature: 32863
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEIFAVLPDKINSCLKDKSNLNKLQEIRVKVGKPLNIVLDNTETIFNYVIRREDVKAII CCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVG HHHCCCEEEEEHHHHHCCEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC CSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGLKGKRTVVIDERS CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCH EIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAY HHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHH NSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSGKKGIGTIEGIYNV CCCCEEEEEECCCCHHHHHHCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MKEIFAVLPDKINSCLKDKSNLNKLQEIRVKVGKPLNIVLDNTETIFNYVIRREDVKAII CCCHHHHCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVG HHHCCCEEEEEHHHHHCCEEEEECCCEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC CSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGLKGKRTVVIDERS CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCH EIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAY HHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHH NSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSGKKGIGTIEGIYNV CCCCEEEEEECCCCHHHHHHCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1766372; 8969508; 9384377 [H]