Click here to switch to the map view.

The map label for this gene is xseB

Identifier: 18310803

GI number: 18310803

Start: 2099966

End: 2100193

Strand: Reverse

Name: xseB

Synonym: CPE1821

Alternate gene names: 18310803

Gene position: 2100193-2099966 (Counterclockwise)

Preceding gene: 18310804

Following gene: 18310802

Centisome position: 69.28

GC content: 29.39

Gene sequence:

>228_bases
ATGGCTAGAAAAGAAACTAATTATGAAAGTATGGTTAGTGAATTAAATGAAATCGTAAAGCAACTGGAAAATGGAGATTT
GACCTTAGAAGAGTCTATAAAAAGCTATGAAAATGGAGTTAAAATAGTAAATAAACTATATAAGAAGCTAAGCACTTTAG
AAGGCAAAATAAAGGTTGTTGAAGATGAAAAAGAGGAAGACTTTGGAGGATACAGCAATGAATATTAA

Upstream 100 bases:

>100_bases
TGAATTAAAAAAGAACGATATGGTAAAAGTGATAATGAAGGATGGTTCCGTTAATATAGATATAAAAATTATTAATGAAT
AAGGAGCAAAGAGAGATAAA

Downstream 100 bases:

>100_bases
TAGCTTAAAAGAGGAAGTTGATCAATCTTTAAAAGCTTATTTTAATAAAGATAGAGAATACAATAAAGTTTTATATGATT
CAATGGCATATAGCATAAAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MARKETNYESMVSELNEIVKQLENGDLTLEESIKSYENGVKIVNKLYKKLSTLEGKIKVVEDEKEEDFGGYSNEY

Sequences:

>Translated_75_residues
MARKETNYESMVSELNEIVKQLENGDLTLEESIKSYENGVKIVNKLYKKLSTLEGKIKVVEDEKEEDFGGYSNEY
>Mature_74_residues
ARKETNYESMVSELNEIVKQLENGDLTLEESIKSYENGVKIVNKLYKKLSTLEGKIKVVEDEKEEDFGGYSNEY

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_CLOP1 (Q0TPD6)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696504.1
- ProteinModelPortal:   Q0TPD6
- SMR:   Q0TPD6
- STRING:   Q0TPD6
- GeneID:   4202924
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_2075
- TIGR:   CPF_2075
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   LENIVAS
- ProtClustDB:   PRK00977
- BioCyc:   CPER195103:CPF_2075-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8669; Mature: 8538

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKETNYESMVSELNEIVKQLENGDLTLEESIKSYENGVKIVNKLYKKLSTLEGKIKVV
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
EDEKEEDFGGYSNEY
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARKETNYESMVSELNEIVKQLENGDLTLEESIKSYENGVKIVNKLYKKLSTLEGKIKVV
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
EDEKEEDFGGYSNEY
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA