Click here to switch to the map view.

The map label for this gene is rbsB [H]

Identifier: 18310609

GI number: 18310609

Start: 1900964

End: 1901404

Strand: Reverse

Name: rbsB [H]

Synonym: CPE1627

Alternate gene names: 18310609

Gene position: 1901404-1900964 (Counterclockwise)

Preceding gene: 18310610

Following gene: 18310608

Centisome position: 62.72

GC content: 31.97

Gene sequence:

>441_bases
TTGAGATACAAGGTATTCCAGGTGCATCAGCTACTAGAGATAGGGGAGAAGGATTCAGGATTCCATAATATAATGGATAA
AAATGATAAATTTAACTTTATTTCAATACAAGCTGCTGATTTTGATAGACAAAAAGGTCTTCAAGTTATGGAAAATATAA
TCCAAGCTAATCCTAATATACAAGTTGTATTTGCTCACAATGATGAAATGGCTTTAGGGGCAGTTAAAGCAATTAAGGCT
AGTGGAATAAATGCATTAGTTATAGGATTCGATGGAAATGATGATGCTAAAGATTCCATAGATGCTAATGAAATGACAGC
TACAATAGCTCAACAACCAGATTTAATTGGAGCATTAGGAGTAGAATTAGCTAATAAGATATATAATGGTGAAAGCATTA
AAGATAAAATAGCAGCAGACCTTAAGGTATATACTAAATAA

Upstream 100 bases:

>100_bases
ATAACAAGTCATATAGCTTCAGATAATATAAAAGGTGGAGAAATGGCTGCTGAGTATGTATTAGATAAATTCAAAGATGA
AAAAGGACCAATAAATGTAG

Downstream 100 bases:

>100_bases
GTAGTAAAATTTTAGATTTGTTTTGATTAATAATATTAAATAATGCTTGTATATGCTAAATAGTAGGGGTATAGGTAGTC
ATAATATGGTATAATTACTG

Product: ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRYKVFQVHQLLEIGEKDSGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKA
SGINALVIGFDGNDDAKDSIDANEMTATIAQQPDLIGALGVELANKIYNGESIKDKIAADLKVYTK

Sequences:

>Translated_146_residues
MRYKVFQVHQLLEIGEKDSGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKA
SGINALVIGFDGNDDAKDSIDANEMTATIAQQPDLIGALGVELANKIYNGESIKDKIAADLKVYTK
>Mature_146_residues
MRYKVFQVHQLLEIGEKDSGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVFAHNDEMALGAVKAIKA
SGINALVIGFDGNDDAKDSIDANEMTATIAQQPDLIGALGVELANKIYNGESIKDKIAADLKVYTK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=132, Percent_Identity=46.969696969697, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI1790526, Length=109, Percent_Identity=38.5321100917431, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1790674, Length=109, Percent_Identity=33.0275229357798, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 16054; Mature: 16054

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYKVFQVHQLLEIGEKDSGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNI
CCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEEECCCCHHCCHHHHHHHHHCCCCE
QVVFAHNDEMALGAVKAIKASGINALVIGFDGNDDAKDSIDANEMTATIAQQPDLIGALG
EEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
VELANKIYNGESIKDKIAADLKVYTK
HHHHHHHCCCCCHHHHHHHCEEEECC
>Mature Secondary Structure
MRYKVFQVHQLLEIGEKDSGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNI
CCCHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEEECCCCHHCCHHHHHHHHHCCCCE
QVVFAHNDEMALGAVKAIKASGINALVIGFDGNDDAKDSIDANEMTATIAQQPDLIGALG
EEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHH
VELANKIYNGESIKDKIAADLKVYTK
HHHHHHHCCCCCHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]