Click here to switch to the map view.

The map label for this gene is rbsR [H]

Identifier: 18310608

GI number: 18310608

Start: 1899839

End: 1900825

Strand: Reverse

Name: rbsR [H]

Synonym: CPE1626

Alternate gene names: 18310608

Gene position: 1900825-1899839 (Counterclockwise)

Preceding gene: 18310609

Following gene: 18310607

Centisome position: 62.7

GC content: 28.47

Gene sequence:

>987_bases
ATGGGAAAAACTACATTACTAGACATAGCTAAAGCAGTAAATGTATCAAAGACCACTGTATCTATGGTATTAAATAATAA
AGAAATAAATGTTTCAAAAGAGACTAGAGAAAAAATATTTAAAGCTGCAAAAGATATGAATTATATACCAAATTCCTTAG
CTAGAAGCCTAAGTACTAAAAAGAGTTATACTTTAGGTATGATAATACCAGATATTCAAAACCCTTTTTTCTCAGAAATG
GCAAAGGCCATAGAAATTGAAAGTGAAAAGCATGGTTATAGTATTATTTTGTGCAACACTCTCAATGAAAAGAAGAAAGA
AGAGGAATATTTAAAACTTTTAATTAGTAAATTAGTAGATGGTGTTATAATAGCAGCTTGTGGTGATGGTAAAGAGTGGA
TTAAAATTCTAAAAAATAATAAGATTCCTTTTGTTATGATAGATAGAATGGTTTCAGATGAAAAGAATGCTAATGGTGTA
TTTTGTGATAACAAGAAAGGTGTTGAATTAGGAGTAAATTACTTAGTTAATAGGGGTAATAAGCATATTGCCTTTGTTAC
AGGAAAGGCTAATTTAGAAATAGCTAATTTAAGACTAGAAGGTTTCAAAAATACTGCAAAGAGCTTGGGAATATCTAATG
AGACCATAATAGAAGAATCAGATTTCTCTATGGAAGGTGGAATAAATGCCACAGAGAGAATAATTAAAAATAATAAAAAG
GTAGATGCAATTTTTTATAGTAGTGATGTTATGGCAATTGGAGGTATGAAATACTTAATAAGAAACGGATATAAAATACC
TGAAGATATAAGCATATTAGGTTATGATAATATAAACATTTGTTCTTATATGGAGCCAGAATTAACTACCATAGCTCAAC
CAATATATAAAATTGGGGAATCTTCTTGTAAACTACTTATGGATTTAATAAACAATAAATTTAGAGCCTTCTTTAGTAGA
GAGGGGAACAGTAAAATAATTAAATGA

Upstream 100 bases:

>100_bases
AATAATGCTTGTATATGCTAAATAGTAGGGGTATAGGTAGTCATAATATGGTATAATTACTGTTGTTATAAAAGGAAGCG
GACAAGAGGTGTTGCGTAAA

Downstream 100 bases:

>100_bases
GGTTGTGTCAAAAGTTAATAATAAGACTTACCAACAATATGAAGAGAATATCTAGATGAGCTTTAGAATTTAAATTATTA
CGGAGGAGATATTACGTTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MGKTTLLDIAKAVNVSKTTVSMVLNNKEINVSKETREKIFKAAKDMNYIPNSLARSLSTKKSYTLGMIIPDIQNPFFSEM
AKAIEIESEKHGYSIILCNTLNEKKKEEEYLKLLISKLVDGVIIAACGDGKEWIKILKNNKIPFVMIDRMVSDEKNANGV
FCDNKKGVELGVNYLVNRGNKHIAFVTGKANLEIANLRLEGFKNTAKSLGISNETIIEESDFSMEGGINATERIIKNNKK
VDAIFYSSDVMAIGGMKYLIRNGYKIPEDISILGYDNINICSYMEPELTTIAQPIYKIGESSCKLLMDLINNKFRAFFSR
EGNSKIIK

Sequences:

>Translated_328_residues
MGKTTLLDIAKAVNVSKTTVSMVLNNKEINVSKETREKIFKAAKDMNYIPNSLARSLSTKKSYTLGMIIPDIQNPFFSEM
AKAIEIESEKHGYSIILCNTLNEKKKEEEYLKLLISKLVDGVIIAACGDGKEWIKILKNNKIPFVMIDRMVSDEKNANGV
FCDNKKGVELGVNYLVNRGNKHIAFVTGKANLEIANLRLEGFKNTAKSLGISNETIIEESDFSMEGGINATERIIKNNKK
VDAIFYSSDVMAIGGMKYLIRNGYKIPEDISILGYDNINICSYMEPELTTIAQPIYKIGESSCKLLMDLINNKFRAFFSR
EGNSKIIK
>Mature_327_residues
GKTTLLDIAKAVNVSKTTVSMVLNNKEINVSKETREKIFKAAKDMNYIPNSLARSLSTKKSYTLGMIIPDIQNPFFSEMA
KAIEIESEKHGYSIILCNTLNEKKKEEEYLKLLISKLVDGVIIAACGDGKEWIKILKNNKIPFVMIDRMVSDEKNANGVF
CDNKKGVELGVNYLVNRGNKHIAFVTGKANLEIANLRLEGFKNTAKSLGISNETIIEESDFSMEGGINATERIIKNNKKV
DAIFYSSDVMAIGGMKYLIRNGYKIPEDISILGYDNINICSYMEPELTTIAQPIYKIGESSCKLLMDLINNKFRAFFSRE
GNSKIIK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=325, Percent_Identity=32.6153846153846, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1790194, Length=312, Percent_Identity=33.6538461538462, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787948, Length=327, Percent_Identity=30.8868501529052, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1788474, Length=304, Percent_Identity=29.9342105263158, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1789068, Length=299, Percent_Identity=30.7692307692308, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786540, Length=314, Percent_Identity=30.5732484076433, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789202, Length=292, Percent_Identity=27.0547945205479, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI48994940, Length=314, Percent_Identity=27.0700636942675, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1787580, Length=317, Percent_Identity=26.813880126183, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1790715, Length=311, Percent_Identity=27.6527331189711, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1786268, Length=305, Percent_Identity=21.6393442622951, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787906, Length=322, Percent_Identity=22.360248447205, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790192, Length=220, Percent_Identity=22.2727272727273, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790689, Length=306, Percent_Identity=20.9150326797386, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36729; Mature: 36598

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKTTLLDIAKAVNVSKTTVSMVLNNKEINVSKETREKIFKAAKDMNYIPNSLARSLSTK
CCCCHHHHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
KSYTLGMIIPDIQNPFFSEMAKAIEIESEKHGYSIILCNTLNEKKKEEEYLKLLISKLVD
CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
GVIIAACGDGKEWIKILKNNKIPFVMIDRMVSDEKNANGVFCDNKKGVELGVNYLVNRGN
CEEEEEECCCHHHHHHHHCCCCCEEEEECHHCCCCCCCCEEECCCCCHHHHHHHHHCCCC
KHIAFVTGKANLEIANLRLEGFKNTAKSLGISNETIIEESDFSMEGGINATERIIKNNKK
CEEEEEECCCCEEEEEEEECCHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCC
VDAIFYSSDVMAIGGMKYLIRNGYKIPEDISILGYDNINICSYMEPELTTIAQPIYKIGE
EEEEEEECCEEECCCHHHHHHCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHCH
SSCKLLMDLINNKFRAFFSREGNSKIIK
HHHHHHHHHHCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GKTTLLDIAKAVNVSKTTVSMVLNNKEINVSKETREKIFKAAKDMNYIPNSLARSLSTK
CCCHHHHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
KSYTLGMIIPDIQNPFFSEMAKAIEIESEKHGYSIILCNTLNEKKKEEEYLKLLISKLVD
CCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
GVIIAACGDGKEWIKILKNNKIPFVMIDRMVSDEKNANGVFCDNKKGVELGVNYLVNRGN
CEEEEEECCCHHHHHHHHCCCCCEEEEECHHCCCCCCCCEEECCCCCHHHHHHHHHCCCC
KHIAFVTGKANLEIANLRLEGFKNTAKSLGISNETIIEESDFSMEGGINATERIIKNNKK
CEEEEEECCCCEEEEEEEECCHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCC
VDAIFYSSDVMAIGGMKYLIRNGYKIPEDISILGYDNINICSYMEPELTTIAQPIYKIGE
EEEEEEECCEEECCCHHHHHHCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHCH
SSCKLLMDLINNKFRAFFSREGNSKIIK
HHHHHHHHHHCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]