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The map label for this gene is rbsB [H]

Identifier: 18310610

GI number: 18310610

Start: 1901337

End: 1901876

Strand: Reverse

Name: rbsB [H]

Synonym: CPE1628

Alternate gene names: 18310610

Gene position: 1901876-1901337 (Counterclockwise)

Preceding gene: 18310611

Following gene: 18310609

Centisome position: 62.74

GC content: 32.78

Gene sequence:

>540_bases
ATGCATATAAATAAAAAGATATTTTCAGTTGGATTAATGCTCATGATGCTTATGACTTCATTTATAGGGTGTGGAAGAGA
TAATAAGCCTAAAATAGGAATGGTATTATCAACTCTTAATAACCCATTCTTTGTAAATATGAAAGATGGAGCAGAAAAAG
AGGCTGAAAAATTAGGATATGATTTAGTAGTATTAGATTCTCAAAATGATCCAGCTAAGGAAAGAGCAAATGTAGAGGAT
CTAGTACAATTAGGAGTTATTGCCTTACTTATAAATCCAACAGATAGTGATGCCGTAGTTAAGACTGTTGAGGTAGCTAA
CAAGAGTAATATTCCAGTAATAACATTAGATAGACAAGCTAATGGTGGAAAAATAACAAGTCATATAGCTTCAGATAATA
TAAAAGGTGGAGAAATGGCTGCTGAGTATGTATTAGATAAATTCAAAGATGAAAAAGGACCAATAAATGTAGTTGAGATA
CAAGGTATTCCAGGTGCATCAGCTACTAGAGATAGGGGAGAAGGATTCAGGATTCCATAA

Upstream 100 bases:

>100_bases
ACCATTCTATCAATCAATAGTAAAAGGTTTAGTTATATTAATAGCAGTACTTTTAGATAAAAAGAGCAGAAAAAATTAAG
AAGCTTAAGAGGTGAGTTTT

Downstream 100 bases:

>100_bases
TATAATGGATAAAAATGATAAATTTAACTTTATTTCAATACAAGCTGCTGATTTTGATAGACAAAAAGGTCTTCAAGTTA
TGGAAAATATAATCCAAGCT

Product: ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MHINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDSQNDPAKERANVED
LVQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEI
QGIPGASATRDRGEGFRIP

Sequences:

>Translated_179_residues
MHINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDSQNDPAKERANVED
LVQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEI
QGIPGASATRDRGEGFRIP
>Mature_179_residues
MHINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDSQNDPAKERANVED
LVQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQANGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEI
QGIPGASATRDRGEGFRIP

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=166, Percent_Identity=56.6265060240964, Blast_Score=188, Evalue=2e-49,
Organism=Escherichia coli, GI1790526, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 19400; Mature: 19400

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCEEEEECCCCHHHHHHCCC
DLVVLDSQNDPAKERANVEDLVQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQA
EEEEEECCCCCHHHHCCHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCC
NGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFRIP
CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHINKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCEEEEECCCCHHHHHHCCC
DLVVLDSQNDPAKERANVEDLVQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQA
EEEEEECCCCCHHHHCCHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCC
NGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIPGASATRDRGEGFRIP
CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]