| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310603
Identifier: 18310603
GI number: 18310603
Start: 1890669
End: 1891475
Strand: Reverse
Name: 18310603
Synonym: CPE1621
Alternate gene names: NA
Gene position: 1891475-1890669 (Counterclockwise)
Preceding gene: 18310604
Following gene: 18310601
Centisome position: 62.4
GC content: 26.15
Gene sequence:
>807_bases ATGATTTTATTTGATGGAATGTATTCCTTAGGTGGTGTAATTTTATCATTACTAGCCCTAATGGGAAGCATTTATATAAA TAAAAAAGATTATGAGAAGTATCCCTTTGGTAAGAAGATGATAGAACCTTTAATAGTAATAATTAAATCCTTAGCAATTT TTATTATGTGTATATATTCACTTACAGGTTCTATTAAAGATTTAATAAATGGGGGTAATGAAGTTCAATATGGGTATGCC TTAATATATGCCTTAATATCAACTTTAGGGTGTGGAATTGCATATTTTTTCTTAAAGAAAAAAGGAAAAGCTATTAACTC AAGTTTAATAAATATAGAAAGTAGTCAATGGTTAATGGACGCTTTATTAAGCATGGGAGTTTTAGTAGGATTTTTAATAG CAAATATAATTAAGCATACAGAGTTTATTTGGTTTAATAGATACTTAGATCCATTAATGGTTATTATTTGTTCATCAGTA TTTATAAAAATGCCTATAAAGTCCTTCGGTGATGGATTAAAAGAACTTTTAGAGTTTAAGGCTGATGATAGTATAACTTT AGAAATAGATAAACTTGTAGAGGGAATAGAGAGAGAATATAACTTTGAAGATACCATTACAAGGGTTTCTAAAACGGGAA ATGATTTAAGAATAGAAATAGATTTTATATATAATGAAGAATCTAATATTAAAGCATTAGATGAAATGGATAGTTTAAGA GAAAAAATATTTAATTCTTTATCACATATAAATTATGAAAAATGGCTAAATGTATCCTTTACTAAGGATAAAAAGTGGGC TATATAA
Upstream 100 bases:
>100_bases ATTTATGGAGACGGAAAGTTATTTGCTTAAGATATCTACATTAGGAACATTGTTTTTTGCTGTGTTAGGAATAGCATGGG GATGAACTGTAAAATCAGAG
Downstream 100 bases:
>100_bases AAGCTTAAAATAAAACTTATAAATAGTTTAATAAACAACTTATAAGCTTTAATTTATAGGCTATTTATATAGCCTAGTTT ATTTAGAAAAAGTTAGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Cation Efflux Protein; Co/Zn/Cd Cation Transporter; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux System Component; Cation Efflux Family Protein; Cation Transporter Permease Component; Cation Transporter-Like Membrane Protein; Cation Efflux Transmembrane Protein; Cation Efflux Pump; Cation Efflux System Protein; Cobalt-Zinc-Cadmium Resistance Protein CzcD; Cation Efflux Transporter Protein; CDF Family Transporter
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MILFDGMYSLGGVILSLLALMGSIYINKKDYEKYPFGKKMIEPLIVIIKSLAIFIMCIYSLTGSIKDLINGGNEVQYGYA LIYALISTLGCGIAYFFLKKKGKAINSSLINIESSQWLMDALLSMGVLVGFLIANIIKHTEFIWFNRYLDPLMVIICSSV FIKMPIKSFGDGLKELLEFKADDSITLEIDKLVEGIEREYNFEDTITRVSKTGNDLRIEIDFIYNEESNIKALDEMDSLR EKIFNSLSHINYEKWLNVSFTKDKKWAI
Sequences:
>Translated_268_residues MILFDGMYSLGGVILSLLALMGSIYINKKDYEKYPFGKKMIEPLIVIIKSLAIFIMCIYSLTGSIKDLINGGNEVQYGYA LIYALISTLGCGIAYFFLKKKGKAINSSLINIESSQWLMDALLSMGVLVGFLIANIIKHTEFIWFNRYLDPLMVIICSSV FIKMPIKSFGDGLKELLEFKADDSITLEIDKLVEGIEREYNFEDTITRVSKTGNDLRIEIDFIYNEESNIKALDEMDSLR EKIFNSLSHINYEKWLNVSFTKDKKWAI >Mature_268_residues MILFDGMYSLGGVILSLLALMGSIYINKKDYEKYPFGKKMIEPLIVIIKSLAIFIMCIYSLTGSIKDLINGGNEVQYGYA LIYALISTLGCGIAYFFLKKKGKAINSSLINIESSQWLMDALLSMGVLVGFLIANIIKHTEFIWFNRYLDPLMVIICSSV FIKMPIKSFGDGLKELLEFKADDSITLEIDKLVEGIEREYNFEDTITRVSKTGNDLRIEIDFIYNEESNIKALDEMDSLR EKIFNSLSHINYEKWLNVSFTKDKKWAI
Specific function: Unknown
COG id: COG3965
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30583; Mature: 30583
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILFDGMYSLGGVILSLLALMGSIYINKKDYEKYPFGKKMIEPLIVIIKSLAIFIMCIYS CEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LTGSIKDLINGGNEVQYGYALIYALISTLGCGIAYFFLKKKGKAINSSLINIESSQWLMD HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCHHHHHHH ALLSMGVLVGFLIANIIKHTEFIWFNRYLDPLMVIICSSVFIKMPIKSFGDGLKELLEFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC ADDSITLEIDKLVEGIEREYNFEDTITRVSKTGNDLRIEIDFIYNEESNIKALDEMDSLR CCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHH EKIFNSLSHINYEKWLNVSFTKDKKWAI HHHHHHHHHCCHHHHEECEECCCCCCCC >Mature Secondary Structure MILFDGMYSLGGVILSLLALMGSIYINKKDYEKYPFGKKMIEPLIVIIKSLAIFIMCIYS CEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LTGSIKDLINGGNEVQYGYALIYALISTLGCGIAYFFLKKKGKAINSSLINIESSQWLMD HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCHHHHHHH ALLSMGVLVGFLIANIIKHTEFIWFNRYLDPLMVIICSSVFIKMPIKSFGDGLKELLEFK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC ADDSITLEIDKLVEGIEREYNFEDTITRVSKTGNDLRIEIDFIYNEESNIKALDEMDSLR CCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHH EKIFNSLSHINYEKWLNVSFTKDKKWAI HHHHHHHHHCCHHHHEECEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA