| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yxeH [H]
Identifier: 18310294
GI number: 18310294
Start: 1552125
End: 1552958
Strand: Reverse
Name: yxeH [H]
Synonym: CPE1312
Alternate gene names: 18310294
Gene position: 1552958-1552125 (Counterclockwise)
Preceding gene: 18310295
Following gene: 18310293
Centisome position: 51.23
GC content: 27.34
Gene sequence:
>834_bases ATGAAGTATAAAATGATATGTATAGATATGGATGGTACATTATTAAATTCAAAGAAAGTTGTAAGTGAAGAAAATAGAAT TGCATTAAAAAAAGCTTATGAAAAAGGAGTACACATAATAATATGCACAGGAAGAAATCCTAAAAATGCAATATATTTTT CAGAATTTTTAGGAGTAAACTGTGCTGTAATAGCTAATAATGGAGCTTGGGTAATTGATGAAGATAAGGAAGTTATAATA TCAAAGGATGTTTTAGATGAAAATCAATGTATGGATATTATGAGCATATGTAAAGAGTATAAAGGGGTTCCTAGTTTTCA TTCAAGGGATAGTGTGTATTGGCCATCAAGATTTAGAAAATATTTATATGATATTATTTTGAATAAAAAAATACCTGAAA AATATAGAGTTAAGAATATTTATGTGAAAGAAAAGGAAGAGTGGAGAGAAGTCTTTAAAAGCAACAACATAGGTAAGTGT ATAATAATAGAATTAAATACTAAAAAGCTAAAGAAAATAAGAGAAAATTTAATTAAAAAAGGTAATTATGAAATTACTCA ATCAGGAAGATATGCCTTAGAAGTAAATAATAAAGGGGTATCAAAGGGAAGGGCTGTAAAGGCTTTAGCAGAGGAATATA AGATAAAAAGAGAAGAGATTATATGTATAGGTGATAATGAAAATGACTTATCTATGATCACTTATGCAGGCTTAGGTGTT GCTATGGGAAATGCCATAGATTCTTTAAAGGAAAAAGCAGATTATATAACTGAAAGTAATGATAAAAATGGGGTGGCAAA GGTAATATATGAATTTGTATTAAAGAATGATTAA
Upstream 100 bases:
>100_bases AATTTATTTTAAAACTTAAGCCATAAAAATAAATTTAATATGCTAAAAGGGGGAGAGGTTAATAAATTAACTCTCTCCTT TTATTTTGGGAGGAGAATTT
Downstream 100 bases:
>100_bases CTTGCATTTTATTTCATTAGATAATATCATATACTTGTGACTTAACTTAAAAATTTATAATTTTTTACATTTATTTGGAG GGACAAAGGTGAATCTTAAT
Product: HAD hydrolase, IIB family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MKYKMICIDMDGTLLNSKKVVSEENRIALKKAYEKGVHIIICTGRNPKNAIYFSEFLGVNCAVIANNGAWVIDEDKEVII SKDVLDENQCMDIMSICKEYKGVPSFHSRDSVYWPSRFRKYLYDIILNKKIPEKYRVKNIYVKEKEEWREVFKSNNIGKC IIIELNTKKLKKIRENLIKKGNYEITQSGRYALEVNNKGVSKGRAVKALAEEYKIKREEIICIGDNENDLSMITYAGLGV AMGNAIDSLKEKADYITESNDKNGVAKVIYEFVLKND
Sequences:
>Translated_277_residues MKYKMICIDMDGTLLNSKKVVSEENRIALKKAYEKGVHIIICTGRNPKNAIYFSEFLGVNCAVIANNGAWVIDEDKEVII SKDVLDENQCMDIMSICKEYKGVPSFHSRDSVYWPSRFRKYLYDIILNKKIPEKYRVKNIYVKEKEEWREVFKSNNIGKC IIIELNTKKLKKIRENLIKKGNYEITQSGRYALEVNNKGVSKGRAVKALAEEYKIKREEIICIGDNENDLSMITYAGLGV AMGNAIDSLKEKADYITESNDKNGVAKVIYEFVLKND >Mature_277_residues MKYKMICIDMDGTLLNSKKVVSEENRIALKKAYEKGVHIIICTGRNPKNAIYFSEFLGVNCAVIANNGAWVIDEDKEVII SKDVLDENQCMDIMSICKEYKGVPSFHSRDSVYWPSRFRKYLYDIILNKKIPEKYRVKNIYVKEKEEWREVFKSNNIGKC IIIELNTKKLKKIRENLIKKGNYEITQSGRYALEVNNKGVSKGRAVKALAEEYKIKREEIICIGDNENDLSMITYAGLGV AMGNAIDSLKEKADYITESNDKNGVAKVIYEFVLKND
Specific function: Unknown
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]
Homologues:
Organism=Escherichia coli, GI2367265, Length=287, Percent_Identity=33.1010452961672, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1786982, Length=274, Percent_Identity=24.4525547445255, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87081790, Length=278, Percent_Identity=24.8201438848921, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994981, Length=252, Percent_Identity=24.6031746031746, Blast_Score=77, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR000150 - InterPro: IPR006380 [H]
Pfam domain/function: PF00702 Hydrolase; PF05116 S6PP [H]
EC number: NA
Molecular weight: Translated: 31812; Mature: 31812
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYKMICIDMDGTLLNSKKVVSEENRIALKKAYEKGVHIIICTGRNPKNAIYFSEFLGVN CCEEEEEEECCCCEECCCHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEHHHCCE CAVIANNGAWVIDEDKEVIISKDVLDENQCMDIMSICKEYKGVPSFHSRDSVYWPSRFRK EEEEECCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHH YLYDIILNKKIPEKYRVKNIYVKEKEEWREVFKSNNIGKCIIIELNTKKLKKIRENLIKK HHHHHHHCCCCCHHHCEEEEEEECHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHC GNYEITQSGRYALEVNNKGVSKGRAVKALAEEYKIKREEIICIGDNENDLSMITYAGLGV CCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECHHH AMGNAIDSLKEKADYITESNDKNGVAKVIYEFVLKND HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKYKMICIDMDGTLLNSKKVVSEENRIALKKAYEKGVHIIICTGRNPKNAIYFSEFLGVN CCEEEEEEECCCCEECCCHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEHHHCCE CAVIANNGAWVIDEDKEVIISKDVLDENQCMDIMSICKEYKGVPSFHSRDSVYWPSRFRK EEEEECCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHH YLYDIILNKKIPEKYRVKNIYVKEKEEWREVFKSNNIGKCIIIELNTKKLKKIRENLIKK HHHHHHHCCCCCHHHCEEEEEEECHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHC GNYEITQSGRYALEVNNKGVSKGRAVKALAEEYKIKREEIICIGDNENDLSMITYAGLGV CCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECHHH AMGNAIDSLKEKADYITESNDKNGVAKVIYEFVLKND HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]