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The map label for this gene is yibK [C]

Identifier: 18310293

GI number: 18310293

Start: 1551575

End: 1552036

Strand: Reverse

Name: yibK [C]

Synonym: CPE1311

Alternate gene names: 18310293

Gene position: 1552036-1551575 (Counterclockwise)

Preceding gene: 18310294

Following gene: 18310292

Centisome position: 51.2

GC content: 29.87

Gene sequence:

>462_bases
GTGAATCTTAATATAGTATTATATCAACCAGAAATACCACAAAACACTGGTAATATAGCAAGAACATGTGTTTTAACAAA
TTCAAAGCTTCATATAATAAAACCTATGGGCTTTGTTATAGATGATAAGCATTTAAAAAGAGCTGGATTAGATTATTGGA
GTCAATTAGATCTTGAAATTCATGAAAGTTATGAAGATTTTATGAAAAAGTATGGAGATAAGAAAATTTACTTATCAACA
ACTCATGCTGAGGATCATTATGATGAAGTAAAGTATGAAGAGGGAGCTTTTATAATGTTTGGAAGAGAGTCAGCTGGAGT
TCCAGAGGATGTTCATAATGCTCACCATGGAATAAAAGTACAGATGATAAATACAACTACTAGAAGTTTGAATTTATCAA
ACACAGTAGCTATTATAGCTTATGAAGCTTTAAGACAAATTGGATTTCCAAACATGAAATAA

Upstream 100 bases:

>100_bases
AAGAATGATTAACTTGCATTTTATTTCATTAGATAATATCATATACTTGTGACTTAACTTAAAAATTTATAATTTTTTAC
ATTTATTTGGAGGGACAAAG

Downstream 100 bases:

>100_bases
GGGGGAAATATATTTTGGATAAAATAAAGATCATAACAGATAGTACCTGTGACTTATCTAAGGAGATTATAGAAAAGTAT
GACATAGACGTAATGCCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESYEDFMKKYGDKKIYLST
THAEDHYDEVKYEEGAFIMFGRESAGVPEDVHNAHHGIKVQMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK

Sequences:

>Translated_153_residues
MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESYEDFMKKYGDKKIYLST
THAEDHYDEVKYEEGAFIMFGRESAGVPEDVHNAHHGIKVQMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK
>Mature_153_residues
MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESYEDFMKKYGDKKIYLST
THAEDHYDEVKYEEGAFIMFGRESAGVPEDVHNAHHGIKVQMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=151, Percent_Identity=45.0331125827815, Blast_Score=142, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 17555; Mature: 17555

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI
CCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCEEECCHHHHHHCCCCHHHCCCHH
HESYEDFMKKYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPEDVHNAHHGIKV
HHHHHHHHHHHCCCEEEEEECCCCCCHHHCEECCCCEEEEECCCCCCCHHHHHCCCCEEE
QMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK
EEEECCCCEECCCCEEEEEEHHHHHHCCCCCCC
>Mature Secondary Structure
MNLNIVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEI
CCCEEEEECCCCCCCCCCEEEEEEEECCCEEEEECCCEEECCHHHHHHCCCCHHHCCCHH
HESYEDFMKKYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPEDVHNAHHGIKV
HHHHHHHHHHHCCCEEEEEECCCCCCHHHCEECCCCEEEEECCCCCCCHHHHHCCCCEEE
QMINTTTRSLNLSNTVAIIAYEALRQIGFPNMK
EEEECCCCEECCCCEEEEEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA