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The map label for this gene is yhfR [C]

Identifier: 18310265

GI number: 18310265

Start: 1512322

End: 1513071

Strand: Direct

Name: yhfR [C]

Synonym: CPE1283

Alternate gene names: 18310265

Gene position: 1512322-1513071 (Clockwise)

Preceding gene: 18310247

Following gene: 18310268

Centisome position: 49.89

GC content: 29.2

Gene sequence:

>750_bases
ATGAAACTCACTACAAAAGATACTAAAACTTCAAAAAAATTGCTCTATACATCTGTATATGATAAGTTATATAAAATGAT
TATTGATGGGGAATACCCTTTAAATTCAAAATTACCCTCTGAGCCTGAACTTGCAAAAAGCTTTGGGGTTAGCCGAATGA
CTTTGCGTCAAGCACTTGCTTTACTACAAGATGATGGTTTAGTAAAAAATATAAGAGGTAAAGGGAATTTTATAATATCT
CCAGAAAAATGTGCTAAAAGAGATTTCTTAGAGTTAATAGGAAATCCTATATACAAGTGTCATACTGAAAAAATTCAAGA
TATTGAATTTGTATTCCGCTTAGAACTTGATAGTGATTATACTAAACAGGTTTTAGAAAAGGATTCCACAGCAGTGGTTG
CTTGTGAACGTTATTATAAAAGCAAAAATAAAGTTTTAGCCTACGCTTTTACCTTTATATCTGTTGAAACCGTAAAAGAA
CTTAAAATAGATTTAAATAATGAAAGTGAGCTACTAGACTTTCTTGAACATAAATCCTATGAAATATCAGAAAGTTCTAT
ATTAGAAATAAAGCATTCCTCTGCTGGTAACTCCTTAAATCCAAAATATAAGCTTGTTGGAGGAAATCAATGCGATTTAG
TCTTAGAAACATTATATGCTAATGATTATTCCCCTCCTATATTATTTAACAAATACTATATCCCATCTCAATATAGTACT
TTTAAAATTAAAGCAAGAAAAAAAGAATAA

Upstream 100 bases:

>100_bases
AATAATTCTCTATTAATTCAAATAAATAGAAATTTATGATATACTATTTCTGTTAAAGGTTGTATATAATATAAATTTTA
TAAATAAGTAAGGTGTTAAG

Downstream 100 bases:

>100_bases
TTTAAACTTTTAAAAATATTTCTACATAAAAAACAGCAATAATATTTTAAATATTATTGCTGTTTTCATTTCTCATTACA
TTGTACTATATAAACTAAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulatory Protein; Transcriptional Regulator GntR Family; GntR Family Transcriptional Regulator; Transcription Regulator; Regulatory Protein GntR HTH

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKLTTKDTKTSKKLLYTSVYDKLYKMIIDGEYPLNSKLPSEPELAKSFGVSRMTLRQALALLQDDGLVKNIRGKGNFIIS
PEKCAKRDFLELIGNPIYKCHTEKIQDIEFVFRLELDSDYTKQVLEKDSTAVVACERYYKSKNKVLAYAFTFISVETVKE
LKIDLNNESELLDFLEHKSYEISESSILEIKHSSAGNSLNPKYKLVGGNQCDLVLETLYANDYSPPILFNKYYIPSQYST
FKIKARKKE

Sequences:

>Translated_249_residues
MKLTTKDTKTSKKLLYTSVYDKLYKMIIDGEYPLNSKLPSEPELAKSFGVSRMTLRQALALLQDDGLVKNIRGKGNFIIS
PEKCAKRDFLELIGNPIYKCHTEKIQDIEFVFRLELDSDYTKQVLEKDSTAVVACERYYKSKNKVLAYAFTFISVETVKE
LKIDLNNESELLDFLEHKSYEISESSILEIKHSSAGNSLNPKYKLVGGNQCDLVLETLYANDYSPPILFNKYYIPSQYST
FKIKARKKE
>Mature_249_residues
MKLTTKDTKTSKKLLYTSVYDKLYKMIIDGEYPLNSKLPSEPELAKSFGVSRMTLRQALALLQDDGLVKNIRGKGNFIIS
PEKCAKRDFLELIGNPIYKCHTEKIQDIEFVFRLELDSDYTKQVLEKDSTAVVACERYYKSKNKVLAYAFTFISVETVKE
LKIDLNNESELLDFLEHKSYEISESSILEIKHSSAGNSLNPKYKLVGGNQCDLVLETLYANDYSPPILFNKYYIPSQYST
FKIKARKKE

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28624; Mature: 28624

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTTKDTKTSKKLLYTSVYDKLYKMIIDGEYPLNSKLPSEPELAKSFGVSRMTLRQALA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHH
LLQDDGLVKNIRGKGNFIISPEKCAKRDFLELIGNPIYKCHTEKIQDIEFVFRLELDSDY
HHHCCCCEEECCCCCCEEECHHHHHHHHHHHHHCCCCEEHHHHHHCCEEEEEEEECCCHH
TKQVLEKDSTAVVACERYYKSKNKVLAYAFTFISVETVKELKIDLNNESELLDFLEHKSY
HHHHHCCCCCEEEEHHHHHCCCCCEEEEEEEHHHHHHHHEEEEECCCHHHHHHHHHCCCC
EISESSILEIKHSSAGNSLNPKYKLVGGNQCDLVLETLYANDYSPPILFNKYYIPSQYST
CCCCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCE
FKIKARKKE
EEEEEECCC
>Mature Secondary Structure
MKLTTKDTKTSKKLLYTSVYDKLYKMIIDGEYPLNSKLPSEPELAKSFGVSRMTLRQALA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHH
LLQDDGLVKNIRGKGNFIISPEKCAKRDFLELIGNPIYKCHTEKIQDIEFVFRLELDSDY
HHHCCCCEEECCCCCCEEECHHHHHHHHHHHHHCCCCEEHHHHHHCCEEEEEEEECCCHH
TKQVLEKDSTAVVACERYYKSKNKVLAYAFTFISVETVKELKIDLNNESELLDFLEHKSY
HHHHHCCCCCEEEEHHHHHCCCCCEEEEEEEHHHHHHHHEEEEECCCHHHHHHHHHCCCC
EISESSILEIKHSSAGNSLNPKYKLVGGNQCDLVLETLYANDYSPPILFNKYYIPSQYST
CCCCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCE
FKIKARKKE
EEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA