| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310247
Identifier: 18310247
GI number: 18310247
Start: 1480226
End: 1481989
Strand: Direct
Name: 18310247
Synonym: CPE1265
Alternate gene names: NA
Gene position: 1480226-1481989 (Clockwise)
Preceding gene: 18310245
Following gene: 18310265
Centisome position: 48.83
GC content: 31.29
Gene sequence:
>1764_bases ATGAAAAAAGATACTATTCTTGGTGCTTCTATTGGCTCTACTGACTTTCATTATCTTCAAAAGGATTATGATGAAATAAA GAAATTAAACTTAAATACTTGGAATGAGGTAGCTTGGATAGGAGATGAACTTAATTCTAAAATTGTTATGTGGACAAACT CCTCTCCTGTTAATAATGTTACCCTTTCTTCAAGTGACTTTATAAATGAAAATGGGGATTTAATCTCTTCAAATAATATT AAGATTTCTTGGCTTAAAGAAACCTTAGCTAATATAGGACGTAGTAATCCTTCTGCTCCTCTTGAACCTTTCCCAGATAT TATTCATAATTCTGGTTCACTAAATATAGAAAAAAATAAAATAGCCTCTGCATGGATTAATATAAAAATTCCTAGGAATG CAAAACCTGGAATTTATAATGGTTCTATTGAGGTCACTGCTGATGAATTAGAAAAAGCCTATACTTTTGATTATTCCTTT GAAGTTTTAAACTTAGTACAACCTCTTCCAAGGGAAACAAATACTCAAATTGAGTTTTGGCAACATCCTTACACCATAGC AAGGTATTATAAAATATCCAAAGAAGATTTATTTACAGAAAAGCATTTTAAATATTTAAAAGATAATCTTAAAGAGTATA GAAATATAGGAGGACGTGGTGTTATAGCTACTATAGTTCATGAAGCTTGGAATCATCAATCTTATGATAGTGACCCTTCA ATGATTAAGTGGAGAAAAAACTCCTATGGCACCTTTGAATTTGACTACTCTCACTTTGATAAGTGGATTCAACTTAATAT AGACTTAGGAATTCTAGATCCTGAAAAGGGCTTTGGCCAAATAAAGTGTTACAGTATTGTCCCTTGGAATAATAGAATTC AGTACTTTAATGAGGCTACTAATAAAGAAGAAGCCATAAATCCAAACCCTGGTGGTGATCTTTGGATAAACATTTGGACA CAATTTTTAACTTCATTTATGTCTCATCTTGAAGAAAAAGGATGGTTTAACATAACTTATATTTCAATGGATGAAAGAAG TATGGATGATTTAAAAGCTTGTGTTGATTTAATTGAAAGCATAACAAATAACTCTTATGAGCATTTTAAAATTTCTTCTG CCATGGATTATGAAAGTGGAAATGACTACTCCTTCTTAGATAGAATAGATGATATATCAATTGGATTATCCCATATAAAT CATAATTCTAATGATATGAAAAACATGGCTACTCATAGACAAGAGCTTGGATTATTAACTACAATATACACCTGTACTGG AGATTATCCAAGTAGTTTCACCATAAGTGATCCTATAGAAGGTGCTTTTACTATGTGGTACTCCCTATATCAAAACACCA ATGGCTTTTTACGTTGGTCATGGGATGGTTGGGTTGAAAACCCTTTAGAAAATGTTTCTTATAAATATTGGGAACCTGGA GACCCTTTTCTTATATACCCAGCAGAAAAGGATAGCATAGGTAAAACCTTTTATTCTACTCCTAGATTAGAAAAATTAAA GGAAGGTATAAGAGATATAAACAAAGCTAAATACCTTATGGAAAAGGCTCCAAACTTAAAGAATTCTATAGAAAATTTAA TCTACTCTCTAAAAAGACCTAATAAAGGAGAAAATGCCTATGGCTCTGCAGTAGCAGCTTCTAAGGAAGATAGAGATTTA ACTATCTCAGAAGCAAATAGAATTAAAAATGGCATAAATAACTTTGCAAGAGAATTTATTTCATTAACTATGGAAACCTT GTAG
Upstream 100 bases:
>100_bases CCTTTTAACAATATACTTTTTTTAAATGTTCTATTTTTAAAACTTCTATCTTATAATGTATTTATTACTAATTTTTAGAA AAAGAAGGAAGGTTTATTTT
Downstream 100 bases:
>100_bases TTAATCTACTTAGAAATTTTCACCCTTTAGAAATCAATAAAAATAGACGTGTATCAAAGTAAGTTTTATTATTATACTTT GATACACCCCCCTTTTATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MKKDTILGASIGSTDFHYLQKDYDEIKKLNLNTWNEVAWIGDELNSKIVMWTNSSPVNNVTLSSSDFINENGDLISSNNI KISWLKETLANIGRSNPSAPLEPFPDIIHNSGSLNIEKNKIASAWINIKIPRNAKPGIYNGSIEVTADELEKAYTFDYSF EVLNLVQPLPRETNTQIEFWQHPYTIARYYKISKEDLFTEKHFKYLKDNLKEYRNIGGRGVIATIVHEAWNHQSYDSDPS MIKWRKNSYGTFEFDYSHFDKWIQLNIDLGILDPEKGFGQIKCYSIVPWNNRIQYFNEATNKEEAINPNPGGDLWINIWT QFLTSFMSHLEEKGWFNITYISMDERSMDDLKACVDLIESITNNSYEHFKISSAMDYESGNDYSFLDRIDDISIGLSHIN HNSNDMKNMATHRQELGLLTTIYTCTGDYPSSFTISDPIEGAFTMWYSLYQNTNGFLRWSWDGWVENPLENVSYKYWEPG DPFLIYPAEKDSIGKTFYSTPRLEKLKEGIRDINKAKYLMEKAPNLKNSIENLIYSLKRPNKGENAYGSAVAASKEDRDL TISEANRIKNGINNFAREFISLTMETL
Sequences:
>Translated_587_residues MKKDTILGASIGSTDFHYLQKDYDEIKKLNLNTWNEVAWIGDELNSKIVMWTNSSPVNNVTLSSSDFINENGDLISSNNI KISWLKETLANIGRSNPSAPLEPFPDIIHNSGSLNIEKNKIASAWINIKIPRNAKPGIYNGSIEVTADELEKAYTFDYSF EVLNLVQPLPRETNTQIEFWQHPYTIARYYKISKEDLFTEKHFKYLKDNLKEYRNIGGRGVIATIVHEAWNHQSYDSDPS MIKWRKNSYGTFEFDYSHFDKWIQLNIDLGILDPEKGFGQIKCYSIVPWNNRIQYFNEATNKEEAINPNPGGDLWINIWT QFLTSFMSHLEEKGWFNITYISMDERSMDDLKACVDLIESITNNSYEHFKISSAMDYESGNDYSFLDRIDDISIGLSHIN HNSNDMKNMATHRQELGLLTTIYTCTGDYPSSFTISDPIEGAFTMWYSLYQNTNGFLRWSWDGWVENPLENVSYKYWEPG DPFLIYPAEKDSIGKTFYSTPRLEKLKEGIRDINKAKYLMEKAPNLKNSIENLIYSLKRPNKGENAYGSAVAASKEDRDL TISEANRIKNGINNFAREFISLTMETL >Mature_587_residues MKKDTILGASIGSTDFHYLQKDYDEIKKLNLNTWNEVAWIGDELNSKIVMWTNSSPVNNVTLSSSDFINENGDLISSNNI KISWLKETLANIGRSNPSAPLEPFPDIIHNSGSLNIEKNKIASAWINIKIPRNAKPGIYNGSIEVTADELEKAYTFDYSF EVLNLVQPLPRETNTQIEFWQHPYTIARYYKISKEDLFTEKHFKYLKDNLKEYRNIGGRGVIATIVHEAWNHQSYDSDPS MIKWRKNSYGTFEFDYSHFDKWIQLNIDLGILDPEKGFGQIKCYSIVPWNNRIQYFNEATNKEEAINPNPGGDLWINIWT QFLTSFMSHLEEKGWFNITYISMDERSMDDLKACVDLIESITNNSYEHFKISSAMDYESGNDYSFLDRIDDISIGLSHIN HNSNDMKNMATHRQELGLLTTIYTCTGDYPSSFTISDPIEGAFTMWYSLYQNTNGFLRWSWDGWVENPLENVSYKYWEPG DPFLIYPAEKDSIGKTFYSTPRLEKLKEGIRDINKAKYLMEKAPNLKNSIENLIYSLKRPNKGENAYGSAVAASKEDRDL TISEANRIKNGINNFAREFISLTMETL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67763; Mature: 67763
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKDTILGASIGSTDFHYLQKDYDEIKKLNLNTWNEVAWIGDELNSKIVMWTNSSPVNNV CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCEEEEEECCCCCCEE TLSSSDFINENGDLISSNNIKISWLKETLANIGRSNPSAPLEPFPDIIHNSGSLNIEKNK EECCCCCCCCCCCEEECCCEEEEEHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEECCE IASAWINIKIPRNAKPGIYNGSIEVTADELEKAYTFDYSFEVLNLVQPLPRETNTQIEFW EEEEEEEEEECCCCCCCEECCEEEEEHHHHHHHEECCCHHHHHHHHCCCCCCCCCCEEEE QHPYTIARYYKISKEDLFTEKHFKYLKDNLKEYRNIGGRGVIATIVHEAWNHQSYDSDPS CCCEEEEHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC MIKWRKNSYGTFEFDYSHFDKWIQLNIDLGILDPEKGFGQIKCYSIVPWNNRIQYFNEAT EEEEECCCCCEEEECHHHCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHCC NKEEAINPNPGGDLWINIWTQFLTSFMSHLEEKGWFNITYISMDERSMDDLKACVDLIES CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHH ITNNSYEHFKISSAMDYESGNDYSFLDRIDDISIGLSHINHNSNDMKNMATHRQELGLLT HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEE TIYTCTGDYPSSFTISDPIEGAFTMWYSLYQNTNGFLRWSWDGWVENPLENVSYKYWEPG EEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCEEEECCC DPFLIYPAEKDSIGKTFYSTPRLEKLKEGIRDINKAKYLMEKAPNLKNSIENLIYSLKRP CCEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC NKGENAYGSAVAASKEDRDLTISEANRIKNGINNFAREFISLTMETL CCCCCCCCCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKDTILGASIGSTDFHYLQKDYDEIKKLNLNTWNEVAWIGDELNSKIVMWTNSSPVNNV CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCEEEEEECCCCCCEE TLSSSDFINENGDLISSNNIKISWLKETLANIGRSNPSAPLEPFPDIIHNSGSLNIEKNK EECCCCCCCCCCCEEECCCEEEEEHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEECCE IASAWINIKIPRNAKPGIYNGSIEVTADELEKAYTFDYSFEVLNLVQPLPRETNTQIEFW EEEEEEEEEECCCCCCCEECCEEEEEHHHHHHHEECCCHHHHHHHHCCCCCCCCCCEEEE QHPYTIARYYKISKEDLFTEKHFKYLKDNLKEYRNIGGRGVIATIVHEAWNHQSYDSDPS CCCEEEEHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC MIKWRKNSYGTFEFDYSHFDKWIQLNIDLGILDPEKGFGQIKCYSIVPWNNRIQYFNEAT EEEEECCCCCEEEECHHHCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHCC NKEEAINPNPGGDLWINIWTQFLTSFMSHLEEKGWFNITYISMDERSMDDLKACVDLIES CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHH ITNNSYEHFKISSAMDYESGNDYSFLDRIDDISIGLSHINHNSNDMKNMATHRQELGLLT HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEE TIYTCTGDYPSSFTISDPIEGAFTMWYSLYQNTNGFLRWSWDGWVENPLENVSYKYWEPG EEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCEEEECCC DPFLIYPAEKDSIGKTFYSTPRLEKLKEGIRDINKAKYLMEKAPNLKNSIENLIYSLKRP CCEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC NKGENAYGSAVAASKEDRDLTISEANRIKNGINNFAREFISLTMETL CCCCCCCCCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA