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The map label for this gene is yvrC [H]

Identifier: 18310200

GI number: 18310200

Start: 1422029

End: 1423030

Strand: Reverse

Name: yvrC [H]

Synonym: CPE1218

Alternate gene names: 18310200

Gene position: 1423030-1422029 (Counterclockwise)

Preceding gene: 18310201

Following gene: 18310199

Centisome position: 46.94

GC content: 28.74

Gene sequence:

>1002_bases
ATGAGAAGAAAAAGAATTTTAGGTTTAGCTACTATAGGATTAGTATTTTCCTTAGCTTTAGCAGGATGTACTGGAAGTTC
AAAGGGAAGTACAACTTCAAAAAATACTAATGAGGAAGGGTATCCAGTAACAATAAGTACATATGATCAAAGTGGAAAGG
AATTTCAGGAAACTTTTGAAAGTAAACCTAAGAGGGTTATTAGTACAAATCAGACTACTACAGAAATAATGCTTGATTTA
GATCTACAGGATTCCTTAGTTGGAACATCATTTATGGATAGTCCTATACTTCCAAGATTAGAAGATAAGTATAAAAATAT
AAATGTTCTATCAGAAACATATCCAAGTAAGGAAGCTGTTTTAGCTTTAAATCCAGATTTAATAATGGGATGGAAAAGTG
TATTTTCAGATAAAAATCTAGGTTCTGTAGAATCATGGAATGAAAAAGGAGTTAAAACTTTTATTCAAAGAAACTCTGGT
ATTTCAAAAGAGCAGACTTTAGATGATGTTTATTATGATATAAATGATATAGGTAAGATATTTAATATAGAAGAAAAATC
AACTAAATATGTTGATGATATGAAAGAAAGAATAAATAATATTTCTGAAAAAATAAAATCAGTTAAAGAACCTATGAAAG
TTTTAGTAATAGAAGGTGAAGGAGAAAATAAATATAGAGTTTATGGGCCTAAAACCTTAGTTTCAGATATGGTTTCAAAA
GCTGGTGGTACTAATGTGGCAAAGGAATCAGGTAGTGTTGGAGTTGAGAATATAATAGAAATGAATCCAGATGCTATAGT
TCTTATACATTACTTAAATCAAAATAAAGATAACAAAGAAGAAAAAGCATTATTAGAAAATCCAGCTTTAAAAAATGTAA
CTGCAATAAAAGAAAATAAAATAATATATACTCCTCTTTCAGAAACATATGCAGGTGGTGCAAGAACTGTAGAGGGAATA
GAAAGAATAGCAAAGGGATTATACCCAGACTTATTAAAATAA

Upstream 100 bases:

>100_bases
AATAGTTGAAAAGCCTAAGGTGGATTATGGTAGATGTTTTTCTGATATAGATGAAACAGTAAAATACGTTAAAAATATTT
TGAAATAACAGGGGGATAAA

Downstream 100 bases:

>100_bases
ATTAAGTAAAATATAAACTCTAAGGAACTAAGTTTAAAAATAGTTTCTTAGAGTTTAATAATATATTTTAGGGAGAGATA
AATAAGGTTGTTTAATTTAA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRRKRILGLATIGLVFSLALAGCTGSSKGSTTSKNTNEEGYPVTISTYDQSGKEFQETFESKPKRVISTNQTTTEIMLDL
DLQDSLVGTSFMDSPILPRLEDKYKNINVLSETYPSKEAVLALNPDLIMGWKSVFSDKNLGSVESWNEKGVKTFIQRNSG
ISKEQTLDDVYYDINDIGKIFNIEEKSTKYVDDMKERINNISEKIKSVKEPMKVLVIEGEGENKYRVYGPKTLVSDMVSK
AGGTNVAKESGSVGVENIIEMNPDAIVLIHYLNQNKDNKEEKALLENPALKNVTAIKENKIIYTPLSETYAGGARTVEGI
ERIAKGLYPDLLK

Sequences:

>Translated_333_residues
MRRKRILGLATIGLVFSLALAGCTGSSKGSTTSKNTNEEGYPVTISTYDQSGKEFQETFESKPKRVISTNQTTTEIMLDL
DLQDSLVGTSFMDSPILPRLEDKYKNINVLSETYPSKEAVLALNPDLIMGWKSVFSDKNLGSVESWNEKGVKTFIQRNSG
ISKEQTLDDVYYDINDIGKIFNIEEKSTKYVDDMKERINNISEKIKSVKEPMKVLVIEGEGENKYRVYGPKTLVSDMVSK
AGGTNVAKESGSVGVENIIEMNPDAIVLIHYLNQNKDNKEEKALLENPALKNVTAIKENKIIYTPLSETYAGGARTVEGI
ERIAKGLYPDLLK
>Mature_333_residues
MRRKRILGLATIGLVFSLALAGCTGSSKGSTTSKNTNEEGYPVTISTYDQSGKEFQETFESKPKRVISTNQTTTEIMLDL
DLQDSLVGTSFMDSPILPRLEDKYKNINVLSETYPSKEAVLALNPDLIMGWKSVFSDKNLGSVESWNEKGVKTFIQRNSG
ISKEQTLDDVYYDINDIGKIFNIEEKSTKYVDDMKERINNISEKIKSVKEPMKVLVIEGEGENKYRVYGPKTLVSDMVSK
AGGTNVAKESGSVGVENIIEMNPDAIVLIHYLNQNKDNKEEKALLENPALKNVTAIKENKIIYTPLSETYAGGARTVEGI
ERIAKGLYPDLLK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 37016; Mature: 37016

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRKRILGLATIGLVFSLALAGCTGSSKGSTTSKNTNEEGYPVTISTYDQSGKEFQETFE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
SKPKRVISTNQTTTEIMLDLDLQDSLVGTSFMDSPILPRLEDKYKNINVLSETYPSKEAV
CCCCEEEECCCCEEEEEEEECCHHHHHCCHHCCCCCCCCHHHHHCCCCHHHHCCCCCCEE
LALNPDLIMGWKSVFSDKNLGSVESWNEKGVKTFIQRNSGISKEQTLDDVYYDINDIGKI
EEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
FNIEEKSTKYVDDMKERINNISEKIKSVKEPMKVLVIEGEGENKYRVYGPKTLVSDMVSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECHHHHHHHHHHH
AGGTNVAKESGSVGVENIIEMNPDAIVLIHYLNQNKDNKEEKALLENPALKNVTAIKENK
CCCCCCHHCCCCCCHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEECCC
IIYTPLSETYAGGARTVEGIERIAKGLYPDLLK
EEECCCHHHHCCCHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MRRKRILGLATIGLVFSLALAGCTGSSKGSTTSKNTNEEGYPVTISTYDQSGKEFQETFE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH
SKPKRVISTNQTTTEIMLDLDLQDSLVGTSFMDSPILPRLEDKYKNINVLSETYPSKEAV
CCCCEEEECCCCEEEEEEEECCHHHHHCCHHCCCCCCCCHHHHHCCCCHHHHCCCCCCEE
LALNPDLIMGWKSVFSDKNLGSVESWNEKGVKTFIQRNSGISKEQTLDDVYYDINDIGKI
EEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
FNIEEKSTKYVDDMKERINNISEKIKSVKEPMKVLVIEGEGENKYRVYGPKTLVSDMVSK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECHHHHHHHHHHH
AGGTNVAKESGSVGVENIIEMNPDAIVLIHYLNQNKDNKEEKALLENPALKNVTAIKENK
CCCCCCHHCCCCCCHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEECCC
IIYTPLSETYAGGARTVEGIERIAKGLYPDLLK
EEECCCHHHHCCCHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]