Click here to switch to the map view.

The map label for this gene is yvrB [H]

Identifier: 18310199

GI number: 18310199

Start: 1420883

End: 1421941

Strand: Reverse

Name: yvrB [H]

Synonym: CPE1217

Alternate gene names: 18310199

Gene position: 1421941-1420883 (Counterclockwise)

Preceding gene: 18310200

Following gene: 18310198

Centisome position: 46.91

GC content: 30.97

Gene sequence:

>1059_bases
TTGTTTAATTTAAGTTGGAGAAAAGACAAAAAAGTTTTCATTGCAGTTTTATTAATTTTACTTTTTATATCATCTATAAT
ATTAGGAATATCTTTTGGAGCTGTTGATATTCCACCTTATGATGTTTACAGAGTATTTTTATATAAGGTTTTTGGAATTA
AGATTGGTAATTTAGATGAAATATTAAATAGCACTTTATTTGATATAATATGGGGAGTAAGAATGCCAAGAGTGCTTTTA
GGAGCTTTTGCAGGTATGGCCTTAGCTATGGTTGGTGTAATTATGCAAGCTACTATACAAAACCCTTTAGGAGATCCTTA
CATACTAGGATTGTCATCTGGAGCATCTTTAGGTGCTACATTTTCAATACTAATAGGATTTTCAGGAGTATTATCAAGCT
TTGGCGCACCCTTAGGAGCATTTTTAGGAGCTTTAATTGCATCTATATTTGTGTACTTTTTAGCGAAAATAGGTGGGCGT
ATAACTCCTTTTAAGATGATATTAGCTGGTATGGTTATAAGTTCTATATGTTCATCACTTACAAGCTTAATAATATTTTT
ATCAAAGGATAATGAAGGCATAAGAACAGTTAACTTTTGGATGATGGGAAGTTTGGCAGGAGCACAATGGAGTAATATAG
TTCTTCCCATAGCAATATCAGTTATACCACTAATATACTTCTTTACTCAATATAGAAATTTAAACTTAATGGTATTAGGA
GATGAAACATCTATTACCTTAGGGTTAAATATTGAAAAGCATAGAAAAATATATATGATACTTTCATCTTTAATAACTGG
AGTTATTGTATCAGTATGTGGAACTATAGGCTTTGTTGGAATTATGATTCCACACATTGTAAGACTTATATTTGGAACGG
ATCATAAAACTTTACTACCTTTTAGTGCTTTAGTTGGAGCTATATTTCTTATATGGGCAGATGTAATTGCTAGATGTGCT
ATTAATAATATGGAACTTCCTATAGGAATAATTACCTCTGTAATAGGAGCCCCTTTCTTATTATGGCTTATGGTAAAAGG
AACTAGAGAAAAGGAGTAA

Upstream 100 bases:

>100_bases
CTTATTAAAATAAATTAAGTAAAATATAAACTCTAAGGAACTAAGTTTAAAAATAGTTTCTTAGAGTTTAATAATATATT
TTAGGGAGAGATAAATAAGG

Downstream 100 bases:

>100_bases
GGATTATGATAAGATTAGAAAATCTAGAAGTTTCTATAAACAAAAGTGAAATTATAAAGGGAGTTTCATTTCATGTTAAT
AAGGGTGATTTTGTTGGTCT

Product: ABC transporter

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MFNLSWRKDKKVFIAVLLILLFISSIILGISFGAVDIPPYDVYRVFLYKVFGIKIGNLDEILNSTLFDIIWGVRMPRVLL
GAFAGMALAMVGVIMQATIQNPLGDPYILGLSSGASLGATFSILIGFSGVLSSFGAPLGAFLGALIASIFVYFLAKIGGR
ITPFKMILAGMVISSICSSLTSLIIFLSKDNEGIRTVNFWMMGSLAGAQWSNIVLPIAISVIPLIYFFTQYRNLNLMVLG
DETSITLGLNIEKHRKIYMILSSLITGVIVSVCGTIGFVGIMIPHIVRLIFGTDHKTLLPFSALVGAIFLIWADVIARCA
INNMELPIGIITSVIGAPFLLWLMVKGTREKE

Sequences:

>Translated_352_residues
MFNLSWRKDKKVFIAVLLILLFISSIILGISFGAVDIPPYDVYRVFLYKVFGIKIGNLDEILNSTLFDIIWGVRMPRVLL
GAFAGMALAMVGVIMQATIQNPLGDPYILGLSSGASLGATFSILIGFSGVLSSFGAPLGAFLGALIASIFVYFLAKIGGR
ITPFKMILAGMVISSICSSLTSLIIFLSKDNEGIRTVNFWMMGSLAGAQWSNIVLPIAISVIPLIYFFTQYRNLNLMVLG
DETSITLGLNIEKHRKIYMILSSLITGVIVSVCGTIGFVGIMIPHIVRLIFGTDHKTLLPFSALVGAIFLIWADVIARCA
INNMELPIGIITSVIGAPFLLWLMVKGTREKE
>Mature_352_residues
MFNLSWRKDKKVFIAVLLILLFISSIILGISFGAVDIPPYDVYRVFLYKVFGIKIGNLDEILNSTLFDIIWGVRMPRVLL
GAFAGMALAMVGVIMQATIQNPLGDPYILGLSSGASLGATFSILIGFSGVLSSFGAPLGAFLGALIASIFVYFLAKIGGR
ITPFKMILAGMVISSICSSLTSLIIFLSKDNEGIRTVNFWMMGSLAGAQWSNIVLPIAISVIPLIYFFTQYRNLNLMVLG
DETSITLGLNIEKHRKIYMILSSLITGVIVSVCGTIGFVGIMIPHIVRLIFGTDHKTLLPFSALVGAIFLIWADVIARCA
INNMELPIGIITSVIGAPFLLWLMVKGTREKE

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=275, Percent_Identity=38.9090909090909, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1788004, Length=281, Percent_Identity=38.0782918149466, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790741, Length=283, Percent_Identity=31.095406360424, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786805, Length=295, Percent_Identity=32.8813559322034, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786347, Length=283, Percent_Identity=31.4487632508834, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1786804, Length=344, Percent_Identity=27.0348837209302, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 38269; Mature: 38269

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLSWRKDKKVFIAVLLILLFISSIILGISFGAVDIPPYDVYRVFLYKVFGIKIGNLDE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ILNSTLFDIIWGVRMPRVLLGAFAGMALAMVGVIMQATIQNPLGDPYILGLSSGASLGAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH
FSILIGFSGVLSSFGAPLGAFLGALIASIFVYFLAKIGGRITPFKMILAGMVISSICSSL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TSLIIFLSKDNEGIRTVNFWMMGSLAGAQWSNIVLPIAISVIPLIYFFTQYRNLNLMVLG
HHHEEEEECCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DETSITLGLNIEKHRKIYMILSSLITGVIVSVCGTIGFVGIMIPHIVRLIFGTDHKTLLP
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
FSALVGAIFLIWADVIARCAINNMELPIGIITSVIGAPFLLWLMVKGTREKE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFNLSWRKDKKVFIAVLLILLFISSIILGISFGAVDIPPYDVYRVFLYKVFGIKIGNLDE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ILNSTLFDIIWGVRMPRVLLGAFAGMALAMVGVIMQATIQNPLGDPYILGLSSGASLGAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH
FSILIGFSGVLSSFGAPLGAFLGALIASIFVYFLAKIGGRITPFKMILAGMVISSICSSL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TSLIIFLSKDNEGIRTVNFWMMGSLAGAQWSNIVLPIAISVIPLIYFFTQYRNLNLMVLG
HHHEEEEECCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DETSITLGLNIEKHRKIYMILSSLITGVIVSVCGTIGFVGIMIPHIVRLIFGTDHKTLLP
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
FSALVGAIFLIWADVIARCAINNMELPIGIITSVIGAPFLLWLMVKGTREKE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]