| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18310115
Identifier: 18310115
GI number: 18310115
Start: 1327849
End: 1329723
Strand: Direct
Name: 18310115
Synonym: CPE1133
Alternate gene names: NA
Gene position: 1327849-1329723 (Clockwise)
Preceding gene: 18310114
Following gene: 18310116
Centisome position: 43.8
GC content: 29.97
Gene sequence:
>1875_bases ATGCAATATATAGAAACTAAAACAGTTTATATAGATAGAGATGAGCTAATAGAGATTAAAGCAATAGAGCATGATGTTAA AACACGCTTTATAGATTTTAAATTTATAGCAGCTAATAAGATTTTAGATATAAGTAATTGTATAGTTAGAGTTTATGCTA TTACAAGTAAAGGCAATGAAATATTTAATAATCTTACTATAGTAGATGGACTTAAAGGAATAGCAAGATTAGAGTTAACA GATGCTTTATTAGTGCCAGGAACTACAGAATATATGTTAAAGATAACTACAGATAACGGTGGCATTCTTAGTTCTAATAG ATTTAATTTAATAGTAGATAAGGACTTAATGACAGGTAATGCTATAGAAGGAACAAATGAGTATAAAGCACTAGATGAAG CTTTAAAGACAGTTGGGGAACTTAATTCTATGAAAGTAAATATAGAAAAAAATGCTACTAACATAGATAAAATAACAGAA AAATTAGATTATACATCAGAAAGAATGCAAGATAATACAGAAACTATTATCTATAATCTTAAAAATAAGGAAGGTTCCTA TGGGGATTGTATAGTCATAAAGGCGGATGATGGAACTTTTAGTATGATTGATTGCTTCATGGAAGAAAATTATCAAGTTC AAATTCAACAATTAGATAAAATTGGATTAACAAAGTTAAAATATCTTTTTATAACTCATGATCACTCTGACCATGTTGGA AATGCTCCTAAAATAATTGAAAAATATAGACCTGACTTTATCGTTTATAAAGACGGTATAGATTATTCTAGGTTGCCAAG CGTAGAGCAAGAATGGGACACTAAAGGATACCATGACAGAATGTTAGCAGCAGCCGATAAGTTTGGAGTACAAAAGATAG TTGCTAATGACCAACAGTTCAGAATTGGGAAAAATGATTATATAGAAGCTTTCGCAAGTAAATTTTATGATTATAGCAAT GAAAATAATATGAGTGTTAATTATTTATTAGTAAGCCATGGAACAAAAAGTCTATTTCCTGGAGACAGTACAGTAGCTAC TGAAACACATCTACAGAATAGAATAGGTAAAATTGATTTATACAAATTAAGTCATCATGGAGCCGACGGTGGTAACTCAG ACAAGCGATTTGAAGAGTTACAAGCTAGGTATTGCTTAATAGATAGATTAGATGTTTATAAGAAAGATATTATAAAAAAC TTTGCTTTAAAATGTCTAAAATATGGCGGTAAAGTTTACTCCAACGATAATAACGATATGACAGTATTTAAAATAGCAAG GGGTACTATTTATCCATGCTGTCATGAGTATAAATTACCACTTCAATTCCTAGATTACTATAGTGGAAAATACAAAATGA CTAATGAAGCTGGGGGAATTGCAACCAAAGGAATATATCCTTATAAATCAGACTTCTACTTTGTAAAGGACGATGGATTT ATTGCTAAAAATGAGTGGATAAAACATGATGGAATTGATTATCATGCAAGTTCTTCAGGTGCTTTAGATAGAAATTGCTT TATTCAAGGTACTTTTAATGAAAAACCTTGTTATTATTGGATAGATGAAAATTGCAAAATGGTTATAGAGCCTAAGCTTA TTTATTATAACAATAATACTTATTTAATTAAGTCTAATACATTAATGGCAGAAGAAGAGTTTTATGAATACCAGGCTAAC TATTATTATGCTGGTAAAGGTGGAGCATTAAAGAAGAATGAATGGCTTTATAAAGATTCTAACTACTATTGGCTAAAATT TAATGGAGTAATGGCTTCTGAGGAAACCTTATTCATTGAAGGCAAGTGGTATGACTTTAACGGAAGTGGAGTATGTACTA ATCCAAGTGCAGGAAGAGATACAAAAGCAAAATAG
Upstream 100 bases:
>100_bases AACAGGTAGAGTTGTAACTGAAAATGGTGGATATGGAGCAAGTCCATATTAGAGAGTAGATTAATTTCTACTCTTTTTTA TTACAAGAAAGGAGAATATT
Downstream 100 bases:
>100_bases AAAGGAGAGTGAACTATGAGTGAAATAGGATTAAACATTAATGTTGATTCTTATAATAACGAAGGAATAAAAACAATAAA AGGTAACAATAATGCAGAAA
Product: choline binding protein
Products: NA
Alternate protein names: Metallo-Beta-Lactamase Family Protein
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MQYIETKTVYIDRDELIEIKAIEHDVKTRFIDFKFIAANKILDISNCIVRVYAITSKGNEIFNNLTIVDGLKGIARLELT DALLVPGTTEYMLKITTDNGGILSSNRFNLIVDKDLMTGNAIEGTNEYKALDEALKTVGELNSMKVNIEKNATNIDKITE KLDYTSERMQDNTETIIYNLKNKEGSYGDCIVIKADDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVG NAPKIIEKYRPDFIVYKDGIDYSRLPSVEQEWDTKGYHDRMLAAADKFGVQKIVANDQQFRIGKNDYIEAFASKFYDYSN ENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDLYKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKN FALKCLKYGGKVYSNDNNDMTVFKIARGTIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGF IAKNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNTYLIKSNTLMAEEEFYEYQAN YYYAGKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIEGKWYDFNGSGVCTNPSAGRDTKAK
Sequences:
>Translated_624_residues MQYIETKTVYIDRDELIEIKAIEHDVKTRFIDFKFIAANKILDISNCIVRVYAITSKGNEIFNNLTIVDGLKGIARLELT DALLVPGTTEYMLKITTDNGGILSSNRFNLIVDKDLMTGNAIEGTNEYKALDEALKTVGELNSMKVNIEKNATNIDKITE KLDYTSERMQDNTETIIYNLKNKEGSYGDCIVIKADDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVG NAPKIIEKYRPDFIVYKDGIDYSRLPSVEQEWDTKGYHDRMLAAADKFGVQKIVANDQQFRIGKNDYIEAFASKFYDYSN ENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDLYKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKN FALKCLKYGGKVYSNDNNDMTVFKIARGTIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGF IAKNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNTYLIKSNTLMAEEEFYEYQAN YYYAGKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIEGKWYDFNGSGVCTNPSAGRDTKAK >Mature_624_residues MQYIETKTVYIDRDELIEIKAIEHDVKTRFIDFKFIAANKILDISNCIVRVYAITSKGNEIFNNLTIVDGLKGIARLELT DALLVPGTTEYMLKITTDNGGILSSNRFNLIVDKDLMTGNAIEGTNEYKALDEALKTVGELNSMKVNIEKNATNIDKITE KLDYTSERMQDNTETIIYNLKNKEGSYGDCIVIKADDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVG NAPKIIEKYRPDFIVYKDGIDYSRLPSVEQEWDTKGYHDRMLAAADKFGVQKIVANDQQFRIGKNDYIEAFASKFYDYSN ENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDLYKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKN FALKCLKYGGKVYSNDNNDMTVFKIARGTIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGF IAKNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNTYLIKSNTLMAEEEFYEYQAN YYYAGKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIEGKWYDFNGSGVCTNPSAGRDTKAK
Specific function: Unknown
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71710; Mature: 71710
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYIETKTVYIDRDELIEIKAIEHDVKTRFIDFKFIAANKILDISNCIVRVYAITSKGNE CCEEEEEEEEECHHHEEEEEEECCCCCEEEEEEEEEECCCEEECCCEEEEEEEEECCCCH IFNNLTIVDGLKGIARLELTDALLVPGTTEYMLKITTDNGGILSSNRFNLIVDKDLMTGN HHHCEEEECCCCCCEEEEEECEEECCCCCEEEEEEEECCCCEEECCCEEEEEECCCCCCC AIEGTNEYKALDEALKTVGELNSMKVNIEKNATNIDKITEKLDYTSERMQDNTETIIYNL CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHCCCCEEEEEEE KNKEGSYGDCIVIKADDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVG CCCCCCCCCEEEEEECCCCEEEHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCC NAPKIIEKYRPDFIVYKDGIDYSRLPSVEQEWDTKGYHDRMLAAADKFGVQKIVANDQQF CCHHHHHHHCCCEEEEECCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHCHHHHHCCCCEE RIGKNDYIEAFASKFYDYSNENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDL EECCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEHHHHHHHCCCCEEE YKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKNFALKCLKYGGKVYSNDNNDM EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCE TVFKIARGTIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGF EEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCEEECCCCCCCCCEEEEECCCE IAKNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNT EECCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCE YLIKSNTLMAEEEFYEYQANYYYAGKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIE EEEECCCEEEHHHHHEEECCEEEECCCCCCCCCCEEEECCCEEEEEECCEEECCCEEEEE GKWYDFNGSGVCTNPSAGRDTKAK EEEEEECCCEEECCCCCCCCCCCC >Mature Secondary Structure MQYIETKTVYIDRDELIEIKAIEHDVKTRFIDFKFIAANKILDISNCIVRVYAITSKGNE CCEEEEEEEEECHHHEEEEEEECCCCCEEEEEEEEEECCCEEECCCEEEEEEEEECCCCH IFNNLTIVDGLKGIARLELTDALLVPGTTEYMLKITTDNGGILSSNRFNLIVDKDLMTGN HHHCEEEECCCCCCEEEEEECEEECCCCCEEEEEEEECCCCEEECCCEEEEEECCCCCCC AIEGTNEYKALDEALKTVGELNSMKVNIEKNATNIDKITEKLDYTSERMQDNTETIIYNL CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHCCCCEEEEEEE KNKEGSYGDCIVIKADDGTFSMIDCFMEENYQVQIQQLDKIGLTKLKYLFITHDHSDHVG CCCCCCCCCEEEEEECCCCEEEHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCC NAPKIIEKYRPDFIVYKDGIDYSRLPSVEQEWDTKGYHDRMLAAADKFGVQKIVANDQQF CCHHHHHHHCCCEEEEECCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHCHHHHHCCCCEE RIGKNDYIEAFASKFYDYSNENNMSVNYLLVSHGTKSLFPGDSTVATETHLQNRIGKIDL EECCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEHHHHHHHCCCCEEE YKLSHHGADGGNSDKRFEELQARYCLIDRLDVYKKDIIKNFALKCLKYGGKVYSNDNNDM EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCE TVFKIARGTIYPCCHEYKLPLQFLDYYSGKYKMTNEAGGIATKGIYPYKSDFYFVKDDGF EEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCEEECCCCCCCCCEEEEECCCE IAKNEWIKHDGIDYHASSSGALDRNCFIQGTFNEKPCYYWIDENCKMVIEPKLIYYNNNT EECCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCE YLIKSNTLMAEEEFYEYQANYYYAGKGGALKKNEWLYKDSNYYWLKFNGVMASEETLFIE EEEECCCEEEHHHHHEEECCEEEECCCCCCCCCCEEEECCCEEEEEECCEEECCCEEEEE GKWYDFNGSGVCTNPSAGRDTKAK EEEEEECCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA