| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310116
Identifier: 18310116
GI number: 18310116
Start: 1329739
End: 1331685
Strand: Direct
Name: 18310116
Synonym: CPE1134
Alternate gene names: NA
Gene position: 1329739-1331685 (Clockwise)
Preceding gene: 18310115
Following gene: 18310117
Centisome position: 43.87
GC content: 27.68
Gene sequence:
>1947_bases ATGAGTGAAATAGGATTAAACATTAATGTTGATTCTTATAATAACGAAGGAATAAAAACAATAAAAGGTAACAATAATGC AGAAATCTATAAACTATATATCTTAAAGAATAAAAGAAGATTAAGTTTAGTAGGTAAGACTGTTAAACTTGGCTATGTAA TGGTTGGGACAACAAATGGAGATGTAATAGAAAATTTAAATATTACAAATGCAGAGCAAGGAGAAATCACCTTCCCAATA ACTAATAGAATTAGTAAGAAGGATGGAGTTTACTCTTGCCAGCTTGCTATTTATGGAGCAGATGGATTCTTAGAGCATAC AGCAACATTTGGATTAACTGTAGAAGCTAATATATTTACTAAAATAGCTGGAGAAATAGTAGATAGTAAAGACTTTACTT ATTTAGAAAATATACTAGACAAAGCTAGTAAGCTAAGTGAAAAGTTAAAAGAAAATACTTCTAGTGCGACTAATGCAAAT AGTAATTTAGAATCTAATATAACAGAAGCTAATAATATTAATTCTAAGCTCTTAGAAAATACTTCTATTGCTACTTCTTT AAATAGTAATTTAGAATCTAATATAAATCTAGCTAAAGAAGTTAAAGAAACTATAAAAGATTTAGATACTAAAAATATAG AAGCTACAAGTAAAATAGAAAGATTAGAAGGCTTAAATGCTAAAGCAGAAGAGTTAAGCAATAACATTAATGAAGCATTA CCAGTTAAAGATGCTCTTGTTAAGAATACTGAATCAGCTAAAGTTGCTAACACAAACCTTGCAGCAGCTAACCAAGAAGC TATATCTAAAAATACAGAACTCCAAGCTTCTTTGGAAAAGACTAAAGAATTTATAAATGGACTTGATGGAAGTCAAAACA TTCCTCAAATTCGTATGGATGTAACGGAGCTACAGAATGGACTTAAATCAAATCAAGCTTTAGCTTATACTGGAAGTTCT ATAAGTGCCGATAATACGCTAGAAGGTAGAACTGAAGGTATGAAAATCGAAGGTAAAACCATGTATAAGAAAGCTGATGG AACTTATACAGATACATGGGAAGAAGGTGTTACTTTAGAATCATTTGGAGAAGAAGAAGGTAATAAAATTAGTATTTTAA GTCATAATAAGAACCTATTTAACTTAAATGAAATCGATAAAAAATTCAACTATAAGGAAATAGAAAATGGGTTTGAAATT TCCAATACAGAGGATGTTATTTATCCTTATGCTAACATAAAAAAGTATATGTTTTTAAAAAAAGGAACTTATACTTTTTT ATATAGTGGAGAAGGTACTGGATTTGTTAATGTTGCTATAAGAAGTACGGTTAATAATGATTCTTATAGTGGAGATATAC CTCCTAATATTCCAAAAACTTTTACGATGGATTCGGATAAAGAAGTTGTTGTAACTTTTTATTTACAAGGCAATATAACA ACTGGAGCTTATAAGAACAAATATACTAATATTCAATTAGTTGAGGGTAGTAAAAACTTAAATTACGAACCTTACAAAGA AGATAAAAAAGATATTTTAATTAAAGAGCCACTTCGTGAAGGTGATTATCTTTATGAAGATAATGGACAAGTTAAAATTG ATAGATATGTGGGAATTAGAAAATACCAAGAAGGTGATGAGAAAAATAAGGATGTAATAACAGATAAAATTAATACTGTT TATATCTTAGATAAACCTGTTACAGAGATAGTAGAAAATTGTGTAGATATAGATTTAGATACATTTGGAGAAAAAACATA CTTTAATATAGAAAATAGTATTAAAGGTAGCTTAGATTTTAAAGTACCAAGTAACATAGCTAGTATAGTACAATCAAACT CTAAAGCTATAAATGAACTCTATAATCTTATAGATACATTAGTATTACCTAATATACTACAGAATACAACAGATATAGAA ATGTTAAAATTAGAAAAATTAAAATAA
Upstream 100 bases:
>100_bases ATTCATTGAAGGCAAGTGGTATGACTTTAACGGAAGTGGAGTATGTACTAATCCAAGTGCAGGAAGAGATACAAAAGCAA AATAGAAAGGAGAGTGAACT
Downstream 100 bases:
>100_bases GAAAGGATGATGTAAAATGAATTTAAGATTAATGTTTGAAAGAATTATAAAGAGAGGATATTTCCCAGAAGGAAAAGAGA ATTTTGGTAAGAAACTAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 648; Mature: 647
Protein sequence:
>648_residues MSEIGLNINVDSYNNEGIKTIKGNNNAEIYKLYILKNKRRLSLVGKTVKLGYVMVGTTNGDVIENLNITNAEQGEITFPI TNRISKKDGVYSCQLAIYGADGFLEHTATFGLTVEANIFTKIAGEIVDSKDFTYLENILDKASKLSEKLKENTSSATNAN SNLESNITEANNINSKLLENTSIATSLNSNLESNINLAKEVKETIKDLDTKNIEATSKIERLEGLNAKAEELSNNINEAL PVKDALVKNTESAKVANTNLAAANQEAISKNTELQASLEKTKEFINGLDGSQNIPQIRMDVTELQNGLKSNQALAYTGSS ISADNTLEGRTEGMKIEGKTMYKKADGTYTDTWEEGVTLESFGEEEGNKISILSHNKNLFNLNEIDKKFNYKEIENGFEI SNTEDVIYPYANIKKYMFLKKGTYTFLYSGEGTGFVNVAIRSTVNNDSYSGDIPPNIPKTFTMDSDKEVVVTFYLQGNIT TGAYKNKYTNIQLVEGSKNLNYEPYKEDKKDILIKEPLREGDYLYEDNGQVKIDRYVGIRKYQEGDEKNKDVITDKINTV YILDKPVTEIVENCVDIDLDTFGEKTYFNIENSIKGSLDFKVPSNIASIVQSNSKAINELYNLIDTLVLPNILQNTTDIE MLKLEKLK
Sequences:
>Translated_648_residues MSEIGLNINVDSYNNEGIKTIKGNNNAEIYKLYILKNKRRLSLVGKTVKLGYVMVGTTNGDVIENLNITNAEQGEITFPI TNRISKKDGVYSCQLAIYGADGFLEHTATFGLTVEANIFTKIAGEIVDSKDFTYLENILDKASKLSEKLKENTSSATNAN SNLESNITEANNINSKLLENTSIATSLNSNLESNINLAKEVKETIKDLDTKNIEATSKIERLEGLNAKAEELSNNINEAL PVKDALVKNTESAKVANTNLAAANQEAISKNTELQASLEKTKEFINGLDGSQNIPQIRMDVTELQNGLKSNQALAYTGSS ISADNTLEGRTEGMKIEGKTMYKKADGTYTDTWEEGVTLESFGEEEGNKISILSHNKNLFNLNEIDKKFNYKEIENGFEI SNTEDVIYPYANIKKYMFLKKGTYTFLYSGEGTGFVNVAIRSTVNNDSYSGDIPPNIPKTFTMDSDKEVVVTFYLQGNIT TGAYKNKYTNIQLVEGSKNLNYEPYKEDKKDILIKEPLREGDYLYEDNGQVKIDRYVGIRKYQEGDEKNKDVITDKINTV YILDKPVTEIVENCVDIDLDTFGEKTYFNIENSIKGSLDFKVPSNIASIVQSNSKAINELYNLIDTLVLPNILQNTTDIE MLKLEKLK >Mature_647_residues SEIGLNINVDSYNNEGIKTIKGNNNAEIYKLYILKNKRRLSLVGKTVKLGYVMVGTTNGDVIENLNITNAEQGEITFPIT NRISKKDGVYSCQLAIYGADGFLEHTATFGLTVEANIFTKIAGEIVDSKDFTYLENILDKASKLSEKLKENTSSATNANS NLESNITEANNINSKLLENTSIATSLNSNLESNINLAKEVKETIKDLDTKNIEATSKIERLEGLNAKAEELSNNINEALP VKDALVKNTESAKVANTNLAAANQEAISKNTELQASLEKTKEFINGLDGSQNIPQIRMDVTELQNGLKSNQALAYTGSSI SADNTLEGRTEGMKIEGKTMYKKADGTYTDTWEEGVTLESFGEEEGNKISILSHNKNLFNLNEIDKKFNYKEIENGFEIS NTEDVIYPYANIKKYMFLKKGTYTFLYSGEGTGFVNVAIRSTVNNDSYSGDIPPNIPKTFTMDSDKEVVVTFYLQGNITT GAYKNKYTNIQLVEGSKNLNYEPYKEDKKDILIKEPLREGDYLYEDNGQVKIDRYVGIRKYQEGDEKNKDVITDKINTVY ILDKPVTEIVENCVDIDLDTFGEKTYFNIENSIKGSLDFKVPSNIASIVQSNSKAINELYNLIDTLVLPNILQNTTDIEM LKLEKLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72288; Mature: 72157
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIGLNINVDSYNNEGIKTIKGNNNAEIYKLYILKNKRRLSLVGKTVKLGYVMVGTTNG CCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEEEECCCEEEEECCEEEEEEEEEECCCC DVIENLNITNAEQGEITFPITNRISKKDGVYSCQLAIYGADGFLEHTATFGLTVEANIFT CEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHEEEEEEEEHHHHH KIAGEIVDSKDFTYLENILDKASKLSEKLKENTSSATNANSNLESNITEANNINSKLLEN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCC TSIATSLNSNLESNINLAKEVKETIKDLDTKNIEATSKIERLEGLNAKAEELSNNINEAL CHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC PVKDALVKNTESAKVANTNLAAANQEAISKNTELQASLEKTKEFINGLDGSQNIPQIRMD CHHHHHHCCCCCCEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEE VTELQNGLKSNQALAYTGSSISADNTLEGRTEGMKIEGKTMYKKADGTYTDTWEEGVTLE HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCHHCCCCHH SFGEEEGNKISILSHNKNLFNLNEIDKKFNYKEIENGFEISNTEDVIYPYANIKKYMFLK HCCCCCCCEEEEEECCCCEEEHHHHHHHCCHHHHCCCCCCCCCCCEEECCCCCEEEEEEE KGTYTFLYSGEGTGFVNVAIRSTVNNDSYSGDIPPNIPKTFTMDSDKEVVVTFYLQGNIT CCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCEE TGAYKNKYTNIQLVEGSKNLNYEPYKEDKKDILIKEPLREGDYLYEDNGQVKIDRYVGIR ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCEEEEEEECCH KYQEGDEKNKDVITDKINTVYILDKPVTEIVENCVDIDLDTFGEKTYFNIENSIKGSLDF HHCCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCCEEEE KVPSNIASIVQSNSKAINELYNLIDTLVLPNILQNTTDIEMLKLEKLK CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC >Mature Secondary Structure SEIGLNINVDSYNNEGIKTIKGNNNAEIYKLYILKNKRRLSLVGKTVKLGYVMVGTTNG CCCEEEEEECCCCCCCCEEEECCCCCEEEEEEEEECCCEEEEECCEEEEEEEEEECCCC DVIENLNITNAEQGEITFPITNRISKKDGVYSCQLAIYGADGFLEHTATFGLTVEANIFT CEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHHEEEEEEEEHHHHH KIAGEIVDSKDFTYLENILDKASKLSEKLKENTSSATNANSNLESNITEANNINSKLLEN HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCC TSIATSLNSNLESNINLAKEVKETIKDLDTKNIEATSKIERLEGLNAKAEELSNNINEAL CHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC PVKDALVKNTESAKVANTNLAAANQEAISKNTELQASLEKTKEFINGLDGSQNIPQIRMD CHHHHHHCCCCCCEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEE VTELQNGLKSNQALAYTGSSISADNTLEGRTEGMKIEGKTMYKKADGTYTDTWEEGVTLE HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCHHCCCCHH SFGEEEGNKISILSHNKNLFNLNEIDKKFNYKEIENGFEISNTEDVIYPYANIKKYMFLK HCCCCCCCEEEEEECCCCEEEHHHHHHHCCHHHHCCCCCCCCCCCEEECCCCCEEEEEEE KGTYTFLYSGEGTGFVNVAIRSTVNNDSYSGDIPPNIPKTFTMDSDKEVVVTFYLQGNIT CCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCEE TGAYKNKYTNIQLVEGSKNLNYEPYKEDKKDILIKEPLREGDYLYEDNGQVKIDRYVGIR ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCEEEEEEECCH KYQEGDEKNKDVITDKINTVYILDKPVTEIVENCVDIDLDTFGEKTYFNIENSIKGSLDF HHCCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCCEEEE KVPSNIASIVQSNSKAINELYNLIDTLVLPNILQNTTDIEMLKLEKLK CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA